A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 2237 | 2017 |
Contamination in low microbial biomass microbiome studies: issues and recommendations R Eisenhofer, JJ Minich, C Marotz, A Cooper, R Knight, LS Weyrich Trends in microbiology 27 (2), 105-117, 2019 | 768 | 2019 |
Microbiome 101: studying, analyzing, and interpreting gut microbiome data for clinicians C Allaband, D McDonald, Y Vázquez-Baeza, JJ Minich, A Tripathi, ... Clinical gastroenterology and hepatology 17 (2), 218-230, 2019 | 279 | 2019 |
Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces A Checinska Sielaff, C Urbaniak, GBM Mohan, VG Stepanov, Q Tran, ... Microbiome 7, 1-21, 2019 | 193 | 2019 |
Quantifying and understanding well-to-well contamination in microbiome research JJ Minich, JG Sanders, A Amir, G Humphrey, JA Gilbert, R Knight MSystems 4 (4), 10.1128/msystems. 00186-19, 2019 | 129* | 2019 |
Visualizing’omic feature rankings and log-ratios using Qurro MW Fedarko, C Martino, JT Morton, A González, G Rahman, CA Marotz, ... NAR genomics and bioinformatics 2 (2), lqaa023, 2020 | 124 | 2020 |
KatharoSeq enables high-throughput microbiome analysis from low-biomass samples JJ Minich, Q Zhu, S Janssen, R Hendrickson, A Amir, R Vetter, J Hyde, ... MSystems 3 (3), 10.1128/msystems. 00218-17, 2018 | 116* | 2018 |
Elevated temperature drives kelp microbiome dysbiosis, while elevated carbon dioxide induces water microbiome disruption JJ Minich, MM Morris, M Brown, M Doane, MS Edwards, TP Michael, ... PLoS One 13 (2), e0192772, 2018 | 116 | 2018 |
Home chemical and microbial transitions across urbanization LI McCall, C Callewaert, Q Zhu, SJ Song, A Bouslimani, JJ Minich, ... Nature microbiology 5 (1), 108-115, 2020 | 104 | 2020 |
Microbial ecology of Atlantic salmon (Salmo salar) hatcheries: impacts of the built environment on fish mucosal microbiota JJ Minich, GD Poore, K Jantawongsri, C Johnston, K Bowie, J Bowman, ... Applied and environmental microbiology 86 (12), e00411-20, 2020 | 88 | 2020 |
Temporal, environmental, and biological drivers of the mucosal microbiome in a wild marine fish, Scomber japonicus JJ Minich, S Petrus, JD Michael, TP Michael, R Knight, EE Allen Msphere 5 (3), 10.1128/msphere. 00401-20, 2020 | 73 | 2020 |
Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity JP Shaffer, LF Nothias, LR Thompson, JG Sanders, RA Salido, ... Nature microbiology 7 (12), 2128-2150, 2022 | 64* | 2022 |
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads JG Sanders, S Nurk, RA Salido, J Minich, ZZ Xu, Q Zhu, C Martino, ... Genome biology 20, 1-14, 2019 | 55 | 2019 |
From sample to multi-omics conclusions in under 48 hours RA Quinn, JA Navas-Molina, ER Hyde, SJ Song, Y Vázquez-Baeza, ... Msystems 1 (2), e00038-16, 2016 | 54* | 2016 |
High-throughput miniaturized 16S rRNA amplicon library preparation reduces costs while preserving microbiome integrity JJ Minich, G Humphrey, RAS Benitez, J Sanders, A Swafford, EE Allen, ... Msystems 3 (6), 10.1128/msystems. 00166-18, 2018 | 51* | 2018 |
Non-targeted tandem mass spectrometry enables the visualization of organic matter chemotype shifts in coastal seawater D Petras, JJ Minich, LB Cancelada, RR Torres, E Kunselman, M Wang, ... Chemosphere 271, 129450, 2021 | 49* | 2021 |
Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces. Microbiome 7: 50 A Checinska Sielaff, C Urbaniak, GBM Mohan, VG Stepanov, Q Tran, ... Bioinformatics 30, 2114-2120, 2019 | 47 | 2019 |
Improved multiple displacement amplification (iMDA) and ultraclean reagents ST Motley, JM Picuri, CD Crowder, JJ Minich, SA Hofstadler, MW Eshoo BMC genomics 15, 1-10, 2014 | 47 | 2014 |
Atlantic Salmon (Salmo salar L., 1758) Gut Microbiota Profile Correlates with Flesh Pigmentation: Cause or Effect? CDH Nguyen, G Amoroso, T Ventura, JJ Minich, A Elizur Marine Biotechnology 22, 786-804, 2020 | 31 | 2020 |
Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species JJ Minich, A Härer, J Vechinski, BW Frable, ZR Skelton, E Kunselman, ... Nature communications 13 (1), 6978, 2022 | 30 | 2022 |