| Determinants of public T cell responses H Li, C Ye, G Ji, J Han Cell research 22 (1), 33-42, 2012 | 140 | 2012 |
| APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data C Ye, Y Long, G Ji, QQ Li, X Wu Bioinformatics 34 (11), 1841-1849, 2018 | 100 | 2018 |
| Recombinatorial biases and convergent recombination determine interindividual TCRβ sharing in murine thymocytes H Li, C Ye, G Ji, X Wu, Z Xiang, Y Li, Y Cao, X Liu, DC Douek, DA Price, ... The Journal of Immunology 189 (5), 2404-2413, 2012 | 53 | 2012 |
| detectMITE: A novel approach to detect miniature inverted repeat transposable elements in genomes C Ye, G Ji, C Liang Scientific reports 6 (1), 19688, 2016 | 49 | 2016 |
| Alternative polyadenylation is involved in auxin‐based plant growth and development L Hong, C Ye, J Lin, H Fu, X Wu, QQ Li The Plant Journal 93 (2), 246-258, 2018 | 45 | 2018 |
| Role of alternative polyadenylation dynamics in acute myeloid leukaemia at single-cell resolution C Ye, Q Zhou, Y Hong, QQ Li Rna Biology 16 (6), 785-797, 2019 | 43 | 2019 |
| Genome-wide alternative polyadenylation dynamics in response to biotic and abiotic stresses in rice C Ye, Q Zhou, X Wu, G Ji, QQ Li Ecotoxicology and environmental safety 183, 109485, 2019 | 42 | 2019 |
| Identification of putative key genes for coastal environments and cold adaptation in mangrove Kandelia obovata through transcriptome analysis W Su, C Ye, Y Zhang, S Hao, QQ Li Science of the total environment 681, 191-201, 2019 | 37 | 2019 |
| A survey on identification and quantification of alternative polyadenylation sites from RNA-seq data M Chen, G Ji, H Fu, Q Lin, C Ye, W Ye, Y Su, X Wu Briefings in Bioinformatics 21 (4), 1261-1276, 2020 | 35 | 2020 |
| PlantAPAdb: a comprehensive database for alternative polyadenylation sites in plants S Zhu, W Ye, L Ye, H Fu, C Ye, X Xiao, Y Ji, W Lin, G Ji, X Wu Plant physiology 182 (1), 228-242, 2020 | 34 | 2020 |
| detectIR: a novel program for detecting perfect and imperfect inverted repeats using complex numbers and vector calculation C Ye, G Ji, L Li, C Liang PloS one 9 (11), e113349, 2014 | 32 | 2014 |
| scAPAtrap: identification and quantification of alternative polyadenylation sites from single-cell RNA-seq data X Wu, T Liu, C Ye, W Ye, G Ji Briefings in Bioinformatics 22 (4), bbaa273, 2021 | 28 | 2021 |
| Differential alternative polyadenylation contributes to the developmental divergence between two rice subspecies, japonica and indica Q Zhou, H Fu, D Yang, C Ye, S Zhu, J Lin, W Ye, G Ji, X Ye, X Wu, QQ Li The Plant Journal 98 (2), 260-276, 2019 | 27 | 2019 |
| HDA6-dependent histone deacetylation regulates mRNA polyadenylation in Arabidopsis J Lin, FY Hung, C Ye, L Hong, YH Shih, K Wu, QQ Li Genome research 30 (10), 1407-1417, 2020 | 26 | 2020 |
| scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data C Ye, Q Zhou, X Wu, C Yu, G Ji, DR Saban, QQ Li Bioinformatics 36 (4), 1262-1264, 2020 | 26 | 2020 |
| Root hair single cell type specific profiles of gene expression and alternative polyadenylation under cadmium stress J Cao, C Ye, G Hao, C Dabney-Smith, AG Hunt, QQ Li Frontiers in plant science 10, 445364, 2019 | 25 | 2019 |
| Transcriptome profiling during mangrove viviparity in response to abscisic acid L Hong, W Su, Y Zhang, C Ye, Y Shen, QQ Li Scientific Reports 8 (1), 770, 2018 | 25 | 2018 |
| Genome-Wide Comparative Analysis of Miniature Inverted Repeat Transposable Elements in 19 Arabidopsis thaliana Ecotype Accessions C Guo, M Spinelli, C Ye, QQ Li, C Liang Scientific reports 7 (1), 2634, 2017 | 20 | 2017 |
| scHinter: imputing dropout events for single-cell RNA-seq data with limited sample size P Ye, W Ye, C Ye, S Li, L Ye, G Ji, X Wu Bioinformatics 36 (3), 789-797, 2020 | 19 | 2020 |
| PlantOrDB: a genome-wide ortholog database for land plants and green algae L Li, G Ji, C Ye, C Shu, J Zhang, C Liang BMC plant biology 15, 1-11, 2015 | 18 | 2015 |
Guoli JiXiamen University在 xmu.edu.cn 的电子邮件经过验证
