| Rates of evolutionary change in viruses: patterns and determinants S Duffy, LA Shackelton, EC Holmes Nature Reviews Genetics 9 (4), 267-276, 2008 | 1701 | 2008 |
| Why are RNA virus mutation rates so damn high? S Duffy PLoS biology 16 (8), e3000003, 2018 | 730 | 2018 |
| Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus tomato yellow leaf curl virus S Duffy, EC Holmes Journal of virology 82 (2), 957-965, 2008 | 337 | 2008 |
| A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics K Rosario, S Duffy, M Breitbart Archives of virology 157 (10), 1851-1871, 2012 | 329 | 2012 |
| Single-cell genomics reveals organismal interactions in uncultivated marine protists HS Yoon, DC Price, R Stepanauskas, VD Rajah, ME Sieracki, WH Wilson, ... Science 332 (6030), 714-717, 2011 | 324 | 2011 |
| Insights into the evolutionary history of an emerging livestock pathogen: porcine circovirus 2 C Firth, MA Charleston, S Duffy, B Shapiro, EC Holmes Journal of virology 83 (24), 12813-12821, 2009 | 297 | 2009 |
| Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses S Duffy, EC Holmes Journal of general virology 90 (6), 1539-1547, 2009 | 229 | 2009 |
| Pleiotropic costs of niche expansion in the RNA bacteriophage Φ6 S Duffy, PE Turner, CL Burch Genetics 172 (2), 751-757, 2006 | 193 | 2006 |
| Diverse circovirus-like genome architectures revealed by environmental metagenomics K Rosario, S Duffy, M Breitbart Journal of General Virology 90 (10), 2418-2424, 2009 | 182 | 2009 |
| Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee EM Adriaenssens, MB Sullivan, P Knezevic, LJ van Zyl, BL Sarkar, ... Archives of virology 165 (5), 1253-1260, 2020 | 177 | 2020 |
| Eukaryotic Circular Rep-Encoding Single-Stranded DNA (CRESS DNA) Viruses: Ubiquitous Viruses With Small Genomes and a Diverse Host Range. L Zhao, K Rosario, M Breitbart, S Duffy Advances in virus research 103, 71-133, 2019 | 171 | 2019 |
| Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee EM Adriaenssens, J Wittmann, JH Kuhn, D Turner, MB Sullivan, BE Dutilh, ... Archives of virology 163 (4), 1125-1129, 2018 | 150 | 2018 |
| Exploring the diversity of plant DNA viruses and their satellites using vector-enabled metagenomics on whiteflies TFF Ng, S Duffy, JE Polston, E Bixby, GE Vallad, M Breitbart PLoS One 6 (4), e19050, 2011 | 144 | 2011 |
| Synonymous site variation due to recombination explains higher genetic variability in begomovirus populations infecting non-cultivated hosts ATM Lima, RR Sobrinho, J Gonzalez-Aguilera, CS Rocha, SJC Silva, ... Journal of General Virology 94 (2), 418-431, 2013 | 118 | 2013 |
| Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee M Krupovic, BE Dutilh, EM Adriaenssens, J Wittmann, FK Vogensen, ... Archives of virology 161 (4), 1095-1099, 2016 | 116 | 2016 |
| Advances in plant virus evolution: translating evolutionary insights into better disease management R Acosta-Leal, S Duffy, Z Xiong, RW Hammond, SF Elena Phytopathology 101 (10), 1136-1148, 2011 | 111 | 2011 |
| Evolution of host specificity drives reproductive isolation among RNA viruses S Duffy, CL Burch, PE Turner Evolution 61 (11), 2614-2622, 2007 | 111 | 2007 |
| Modeling yeast spoilage in cold-filled ready-to-drink beverages with Saccharomyces cerevisiae, Zygosaccharomyces bailii, and Candida lipolytica AS Battey, S Duffy, DW Schaffner Applied and environmental microbiology 68 (4), 1901-1906, 2002 | 109 | 2002 |
| Site-Specific, Enzymatic Biotinylation of Recombinant Proteins in< i> Spodoptera frugiperda</i> Cells Using Biotin Acceptor Peptides S Duffy, KL Tsao, DS Waugh Analytical biochemistry 262 (2), 122-128, 1998 | 105 | 1998 |
| The diversification of begomovirus populations is predominantly driven by mutational dynamics ATM Lima, JCF Silva, FN Silva, GP Castillo-Urquiza, FF Silva, YM Seah, ... Virus Evolution 3 (1), vex005, 2017 | 90 | 2017 |
