| ATTED-II in 2016: a plant coexpression database towards lineage-specific coexpression Y Aoki, Y Okamura, S Tadaka, K Kinoshita, T Obayashi Plant and Cell Physiology 57 (1), e5-e5, 2016 | 199 | 2016 |
| COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems Y Okamura, Y Aoki, T Obayashi, S Tadaka, S Ito, T Narise, K Kinoshita Nucleic acids research 43 (D1), D82-D86, 2015 | 165 | 2015 |
| jMorp updates in 2020: large enhancement of multi-omics data resources on the general Japanese population S Tadaka, E Hishinuma, S Komaki, IN Motoike, J Kawashima, D Saigusa, ... Nucleic acids research 49 (D1), D536-D544, 2021 | 123 | 2021 |
| ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants T Obayashi, Y Okamura, S Ito, S Tadaka, Y Aoki, M Shirota, K Kinoshita Plant and Cell Physiology 55 (1), e6-e6, 2014 | 116 | 2014 |
| COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals T Obayashi, Y Okamura, S Ito, S Tadaka, IN Motoike, K Kinoshita Nucleic acids research 41 (D1), D1014-D1020, 2012 | 106 | 2012 |
| Establishment of protocols for global metabolomics by LC-MS for biomarker discovery D Saigusa, Y Okamura, IN Motoike, Y Katoh, Y Kurosawa, R Saijyo, ... PLoS One 11 (8), e0160555, 2016 | 86 | 2016 |
| BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ... Journal of biomedical semantics 5, 1-13, 2014 | 69 | 2014 |
| A 12-kb structural variation in progressive myoclonic epilepsy was newly identified by long-read whole-genome sequencing T Mizuguchi, T Suzuki, C Abe, A Umemura, K Tokunaga, Y Kawai, ... Journal of human genetics 64 (5), 359-368, 2019 | 63 | 2019 |
| ALCOdb: gene coexpression database for microalgae Y Aoki, Y Okamura, H Ohta, K Kinoshita, T Obayashi Plant and Cell Physiology 57 (1), e3-e3, 2016 | 47 | 2016 |
| Construction and integration of three de novo Japanese human genome assemblies toward a population-specific reference J Takayama, S Tadaka, K Yano, F Katsuoka, C Gocho, T Funayama, ... Nature communications 12 (1), 226, 2021 | 46 | 2021 |
| Zinc finger–IRF composite elements bound by Ikaros/IRF4 complexes function as gene repression in plasma cell K Ochiai, H Kondo, Y Okamura, H Shima, Y Kurokochi, K Kimura, ... Blood advances 2 (8), 883-894, 2018 | 41 | 2018 |
| Genomic testing for pancreatic cancer in clinical practice as real-world evidence H Hayashi, S Tanishima, K Fujii, R Mori, Y Okamura, E Yanagita, ... Pancreatology 18 (6), 647-654, 2018 | 38 | 2018 |
| Inflammatory responses induce an identity crisis of alveolar macrophages, leading to pulmonary alveolar proteinosis R Ebina-Shibuya, M Matsumoto, M Kuwahara, KJ Jang, M Sugai, Y Ito, ... Journal of Biological Chemistry 292 (44), 18098-18112, 2017 | 19 | 2017 |
| Development of a system combining comprehensive genotyping and organoid cultures for identifying and testing genotype-oriented personalised medicine for pancreatobiliary cancers M Shiihara, T Ishikawa, Y Saiki, Y Omori, K Hirose, S Fukushige, N Ikari, ... European Journal of Cancer 148, 239-250, 2021 | 14 | 2021 |
| Comparison of gene coexpression profiles and construction of conserved gene networks to find functional modules Y Okamura, T Obayashi, K Kinoshita PLoS One 10 (7), e0132039, 2015 | 13 | 2015 |
| Whole exome sequencing and establishment of an organoid culture of the carcinoma showing thymus-like differentiation (CASTLE) of the parotid gland T Ishikawa, T Ogawa, A Nakanome, Y Yamauchi, H Usubuchi, M Shiihara, ... Virchows Archiv 478, 1149-1159, 2021 | 10 | 2021 |
| Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data Y Okamura, K Kinoshita BMC bioinformatics 19, 1-9, 2018 | 10 | 2018 |
| jMorp: Japanese Multi-Omics Reference Panel update report 2023 S Tadaka, J Kawashima, E Hishinuma, S Saito, Y Okamura, A Otsuki, ... Nucleic Acids Research 52 (D1), D622-D632, 2024 | 8 | 2024 |
| Identification of dominant transcripts in oxidative stress response by a full-length transcriptome analysis A Otsuki, Y Okamura, Y Aoki, N Ishida, K Kumada, N Minegishi, ... Molecular and Cellular Biology 41 (2), e00472-20, 2021 | 8 | 2021 |
| Construction of a trio-based structural variation panel utilizing activated T lymphocytes and long-read sequencing technology A Otsuki, Y Okamura, N Ishida, S Tadaka, J Takayama, K Kumada, ... Communications Biology 5 (1), 991, 2022 | 7 | 2022 |
