Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing S Sadegh, J Matschinske, DB Blumenthal, G Galindez, T Kacprowski, ... Nature Communications 3518, 2020 | 170 | 2020 |
On the exact computation of the graph edit distance DB Blumenthal, J Gamper Pattern Recognition Letters 134, 46-57, 2020 | 90 | 2020 |
Network medicine for disease module identification and drug repurposing with the NeDRex platform S Sadegh, J Skelton, E Anastasi, J Bernett, DB Blumenthal, G Galindez, ... Nature communications 12 (1), 6848, 2021 | 62 | 2021 |
Finding k-shortest paths with limited overlap T Chondrogiannis, P Bouros, J Gamper, U Leser, DB Blumenthal The VLDB Journal 29 (5), 1023-1047, 2020 | 57 | 2020 |
Comparing heuristics for graph edit distance computation DB Blumenthal, N Boria, J Gamper, S Bougleux, L Brun The VLDB Journal 29 (1), 419-458, 2020 | 56 | 2020 |
Privacy-preserving artificial intelligence techniques in biomedicine R Torkzadehmahani, R Nasirigerdeh, DB Blumenthal, T Kacprowski, ... Methods of information in medicine 61 (S 01), e12-e27, 2022 | 47 | 2022 |
The AIMe registry for artificial intelligence in biomedical research J Matschinske, N Alcaraz, A Benis, M Golebiewski, DG Grimm, L Heumos, ... Nature Methods 18 (10), 1128-1131, 2021 | 46 | 2021 |
On the limits of active module identification O Lazareva, J Baumbach, M List, DB Blumenthal Briefings in Bioinformatics 22 (5), bbab066, 2021 | 40 | 2021 |
Finding k-dissimilar paths with minimum collective length T Chondrogiannis, P Bouros, J Gamper, U Leser, DB Blumenthal Proceedings of the 26th ACM SIGSPATIAL International Conference on Advances …, 2018 | 36 | 2018 |
Improved lower bounds for graph edit distance DB Blumenthal, J Gamper IEEE Transactions on Knowledge and Data Engineering 30 (3), 503-516, 2017 | 28 | 2017 |
Fast linear sum assignment with error-correction and no cost constraints S Bougleux, B Gaüzère, DB Blumenthal, L Brun Pattern Recognition Letters 134, 37-45, 2020 | 24 | 2020 |
GEDLIB: A C++ library for graph edit distance computation DB Blumenthal, S Bougleux, J Gamper, L Brun International Workshop on Graph-Based Representations in Pattern Recognition …, 2019 | 24 | 2019 |
What is meaningful research and how should we measure it? S Helmer, DB Blumenthal, K Paschen Scientometrics 125 (1), 153-169, 2020 | 21 | 2020 |
BiCoN: network-constrained biclustering of patients and omics data O Lazareva, S Canzar, K Yuan, J Baumbach, DB Blumenthal, P Tieri, ... Bioinformatics 37 (16), 2398-2404, 2021 | 20 | 2021 |
Improved local search for graph edit distance N Boria, DB Blumenthal, S Bougleux, L Brun Pattern Recognition Letters 129, 19-25, 2020 | 19 | 2020 |
Exact computation of graph edit distance for uniform and non-uniform metric edit costs DB Blumenthal, J Gamper International Workshop on Graph-Based Representations in Pattern Recognition …, 2017 | 19 | 2017 |
Flimma: a federated and privacy-aware tool for differential gene expression analysis O Zolotareva, R Nasirigerdeh, J Matschinske, R Torkzadehmahani, ... Genome biology 22 (1), 338, 2021 | 18* | 2021 |
Federated principal component analysis for genome-wide association studies A Hartebrodt, R Nasirigerdeh, DB Blumenthal, R Röttger 2021 IEEE International Conference on Data Mining (ICDM), 1090-1095, 2021 | 16 | 2021 |
Robust disease module mining via enumeration of diverse prize-collecting Steiner trees J Bernett, D Krupke, S Sadegh, J Baumbach, SP Fekete, T Kacprowski, ... Bioinformatics 38 (6), 1600-1606, 2022 | 14 | 2022 |
Cracking the black box of deep sequence-based protein–protein interaction prediction J Bernett, DB Blumenthal, M List Briefings in Bioinformatics 25 (2), bbae076, 2024 | 13 | 2024 |