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Jean Vila
Jean Vila
在 stanford.edu 的电子邮件经过验证 - 首页
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A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)
I Dukovski, D Bajić, JM Chacón, M Quintin, JCC Vila, S Sulheim, ...
Nature protocols 16 (11), 5030-5082, 2021
116*2021
Functional attractors in microbial community assembly
S Estrela, JCC Vila, N Lu, D Bajić, M Rebolleda-Gómez, CY Chang, ...
Cell Systems 13 (1), 29-42. e7, 2022
100*2022
Engineering complex communities by directed evolution
CY Chang, JCC Vila, M Bender, R Li, MC Mankowski, M Bassette, ...
Nature ecology & evolution 5 (7), 1011-1023, 2021
742021
Directed evolution of microbial communities
Á Sánchez, JCC Vila, CY Chang, J Diaz-Colunga, S Estrela, ...
Annual review of biophysics 50 (1), 323-341, 2021
722021
Complex yeast–bacteria interactions affect the yield of industrial ethanol fermentation
F Senne de Oliveira Lino, D Bajic, JCC Vila, A Sánchez, MOA Sommer
Nature communications 12 (1), 1498, 2021
682021
On the deformability of an empirical fitness landscape by microbial evolution
D Bajić, JCC Vila, ZD Blount, A Sánchez
Proceedings of the National Academy of Sciences 115 (44), 11286-11291, 2018
652018
Nutrient dominance governs the assembly of microbial communities in mixed nutrient environments
S Estrela, A Sanchez-Gorostiaga, JCC Vila, A Sanchez
Elife 10, e65948, 2021
632021
Uncovering the rules of microbial community invasions
JCC Vila, ML Jones, M Patel, T Bell, J Rosindell
Nature ecology & evolution 3 (8), 1162-1171, 2019
612019
Emergent coexistence in multispecies microbial communities
CY Chang, D Bajić, JCC Vila, S Estrela, A Sanchez
Science 381 (6655), 343-348, 2023
482023
The community-function landscape of microbial consortia
A Sanchez, D Bajic, J Diaz-Colunga, A Skwara, JCC Vila, S Kuehn
Cell Systems 14 (2), 122-134, 2023
362023
Dissimilarity-Overlap Analysis of Replicate Enrichment Communities
CC Jean, L Yang-Yu, S Alvaro
The ISME journal, 2020
192020
Global epistasis and the emergence of function in microbial consortia
J Diaz-Colunga, A Skwara, JCC Vila, D Bajic, A Sanchez
Cell 187 (12), 3108-3119. e30, 2024
17*2024
Diversity begets diversity under microbial niche construction
S Estrela, J Diaz-Colunga, JCC Vila, A Sanchez-Gorostiaga, A Sanchez
BioRxiv, 2022.02. 13.480281, 2022
162022
Assembly of gut-derived bacterial communities follows “early-bird” resource utilization dynamics
A Aranda-Díaz, L Willis, TH Nguyen, PY Ho, J Vila, T Thomsen, T Chavez, ...
bioRxiv, 2023.01. 13.523996, 2023
112023
Predictability of the community‐function landscape in wine yeast ecosystems
J Ruiz, M de Celis, J Diaz‐Colunga, JCC Vila, B Benitez‐Dominguez, ...
Molecular Systems Biology 19 (9), e11613, 2023
92023
The architecture of metabolic networks constrains the evolution of microbial resource hierarchies
S Takano, JCC Vila, R Miyazaki, Á Sánchez, D Bajić
Molecular Biology and Evolution 40 (9), msad187, 2023
42023
Ecological effects of cellular computing in microbial populations
M Baskerville, A Biro, M Blazanin, CY Chang, A Hallworth, N Sonnert, ...
Natural Computing 17, 811-822, 2018
42018
Metabolic similarity and the predictability of microbial community assembly
JCC Vila, J Goldford, S Estrela, D Bajic, A Sanchez-Gorostiaga, ...
bioRxiv, 2023
22023
Competition for shared resources increases dependence on initial population size during coalescence of gut microbial communities
DA Goldman, KS Xue, AB Parrott, RR Jeeda, LR Franzese, JG Lopez, ...
bioRxiv, 2023
2023
On the Evolutionary Ecology of Microbial Metabolic Niche Construction
JCC Vila
Yale University, 2022
2022
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