PHENIX: a comprehensive Python-based system for macromolecular structure solution PD Adams, PV Afonine, G Bunkóczi, VB Chen, IW Davis, N Echols, ... Acta Crystallographica Section D: Biological Crystallography 66 (2), 213-221, 2010 | 23482 | 2010 |
Phaser crystallographic software AJ McCoy, RW Grosse-Kunstleve, PD Adams, MD Winn, LC Storoni, ... Journal of applied crystallography 40 (4), 658-674, 2007 | 20800 | 2007 |
Crystallography & NMR system: A new software suite for macromolecular structure determination AT Brünger, PD Adams, GM Clore, WL DeLano, P Gros, ... Acta Crystallographica Section D: Biological Crystallography 54 (5), 905-921, 1998 | 20658 | 1998 |
Overview of the CCP4 suite and current developments MD Winn, CC Ballard, KD Cowtan, EJ Dodson, P Emsley, PR Evans, ... Acta Crystallographica Section D: Biological Crystallography 67 (4), 235-242, 2011 | 12948 | 2011 |
PHENIX: building new software for automated crystallographic structure determination PD Adams, RW Grosse-Kunstleve, LW Hung, TR Ioerger, AJ McCoy, ... Acta Crystallographica Section D: Biological Crystallography 58 (11), 1948-1954, 2002 | 4850 | 2002 |
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix D Liebschner, PV Afonine, ML Baker, G Bunkóczi, VB Chen, TI Croll, ... Acta Crystallographica Section D: Structural Biology 75 (10), 861-877, 2019 | 4388 | 2019 |
Accurate prediction of protein structures and interactions using a three-track neural network M Baek, F DiMaio, I Anishchenko, J Dauparas, S Ovchinnikov, GR Lee, ... Science 373 (6557), 871-876, 2021 | 3568 | 2021 |
Improved Fourier coefficients for maps using phases from partial structures with errors RJ Read Acta Crystallographica Section A: Foundations of Crystallography 42 (3), 140-149, 1986 | 2582 | 1986 |
Real-space refinement in PHENIX for cryo-EM and crystallography PV Afonine, BK Poon, RJ Read, OV Sobolev, TC Terwilliger, ... Acta Crystallographica Section D: Structural Biology 74 (6), 531-544, 2018 | 2088 | 2018 |
Likelihood-enhanced fast translation functions AJ McCoy, RW Grosse-Kunstleve, LC Storoni, RJ Read Acta Crystallographica Section D: Biological Crystallography 61 (4), 458-464, 2005 | 2078 | 2005 |
Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard TC Terwilliger, RW Grosse-Kunstleve, PV Afonine, NW Moriarty, PH Zwart, ... Acta Crystallographica Section D: Biological Crystallography 64 (1), 61-69, 2008 | 1610 | 2008 |
Likelihood-enhanced fast rotation functions LC Storoni, AJ McCoy, RJ Read Acta Crystallographica Section D: Biological Crystallography 60 (3), 432-438, 2004 | 1425 | 2004 |
Structure of a serpin–protease complex shows inhibition by deformation JA Huntington, RJ Read, RW Carrell Nature 407 (6806), 923-926, 2000 | 1387 | 2000 |
Shiga-like toxins are neutralized by tailored multivalent carbohydrate ligands PI Kitov, JM Sadowska, G Mulvey, GD Armstrong, H Ling, NS Pannu, ... Nature 403 (6770), 669-672, 2000 | 1122 | 2000 |
Pushing the boundaries of molecular replacement with maximum likelihood RJ Read Acta Crystallographica Section D: Biological Crystallography 57 (10), 1373-1382, 2001 | 1069 | 2001 |
Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard TC Terwilliger, PD Adams, RJ Read, AJ McCoy, NW Moriarty, ... Acta Crystallographica Section D: Biological Crystallography 65 (6), 582-601, 2009 | 920 | 2009 |
The Phenix software for automated determination of macromolecular structures PD Adams, PV Afonine, G Bunkóczi, VB Chen, N Echols, JJ Headd, ... Methods 55 (1), 94-106, 2011 | 850 | 2011 |
Automated structure solution with the PHENIX suite PH Zwart, PV Afonine, RW Grosse-Kunstleve, LW Hung, TR Ioerger, ... Structural proteomics: high-throughput methods, 419-435, 2008 | 579 | 2008 |
Structure of the Shiga-like Toxin I B-Pentamer Complexed with an Analogue of Its Receptor Gb3, H Ling, A Boodhoo, B Hazes, MD Cummings, GD Armstrong, JL Brunton, ... Biochemistry 37 (7), 1777-1788, 1998 | 568 | 1998 |
Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement PD Adams, NS Pannu, RJ Read, AT Brünger Proceedings of the National Academy of Sciences 94 (10), 5018-5023, 1997 | 525 | 1997 |