Comprehensive single-cell transcriptional profiling of a multicellular organism J Cao, JS Packer, V Ramani, DA Cusanovich, C Huynh, R Daza, X Qiu, ... Science 357 (6352), 661-667, 2017 | 1307 | 2017 |
Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing DA Cusanovich, R Daza, A Adey, HA Pliner, L Christiansen, ... Science 348 (6237), 910-914, 2015 | 1200 | 2015 |
Joint profiling of chromatin accessibility and gene expression in thousands of single cells J Cao, DA Cusanovich, V Ramani, D Aghamirzaie, HA Pliner, AJ Hill, ... Science 361 (6409), 1380-1385, 2018 | 774 | 2018 |
A single-cell atlas of in vivo mammalian chromatin accessibility DA Cusanovich, AJ Hill, D Aghamirzaie, RM Daza, HA Pliner, JB Berletch, ... Cell 174 (5), 1309-1324. e18, 2018 | 699 | 2018 |
Cicero predicts cis-regulatory DNA interactions from single-cell chromatin accessibility data HA Pliner, JS Packer, JL McFaline-Figueroa, DA Cusanovich, RM Daza, ... Molecular cell 71 (5), 858-871. e8, 2018 | 634 | 2018 |
The cis-regulatory dynamics of embryonic development at single-cell resolution DA Cusanovich, JP Reddington, DA Garfield, RM Daza, D Aghamirzaie, ... Nature 555 (7697), 538-542, 2018 | 345 | 2018 |
A human cell atlas of fetal chromatin accessibility S Domcke, AJ Hill, RM Daza, J Cao, DR O’Day, HA Pliner, KA Aldinger, ... Science 370 (6518), eaba7612, 2020 | 301 | 2020 |
Genome-wide association studies of the human gut microbiota ER Davenport, DA Cusanovich, K Michelini, LB Barreiro, C Ober, Y Gilad PloS one 10 (11), e0140301, 2015 | 279 | 2015 |
Primate transcript and protein expression levels evolve under compensatory selection pressures Z Khan, MJ Ford, DA Cusanovich, A Mitrano, JK Pritchard, Y Gilad Science 342 (6162), 1100-1104, 2013 | 253 | 2013 |
The functional consequences of variation in transcription factor binding DA Cusanovich, B Pavlovic, JK Pritchard, Y Gilad PLoS genetics 10 (3), e1004226, 2014 | 241 | 2014 |
The effects of EBV transformation on gene expression levels and methylation profiles M Çalışkan, DA Cusanovich, C Ober, Y Gilad Human molecular genetics 20 (8), 1643-1652, 2011 | 165 | 2011 |
CRISPR/Cas9-mediated scanning for regulatory elements required for HPRT1 expression via thousands of large, programmed genomic deletions M Gasperini, GM Findlay, A McKenna, JH Milbank, C Lee, MD Zhang, ... The American Journal of Human Genetics 101 (2), 192-205, 2017 | 148 | 2017 |
Mapping 3D genome architecture through in situ DNase Hi-C V Ramani, DA Cusanovich, RJ Hause, W Ma, R Qiu, X Deng, CA Blau, ... Nature protocols 11 (11), 2104-2121, 2016 | 118 | 2016 |
Single-cell ATAC-Seq in human pancreatic islets and deep learning upscaling of rare cells reveals cell-specific type 2 diabetes regulatory signatures V Rai, DX Quang, MR Erdos, DA Cusanovich, RM Daza, N Narisu, LS Zou, ... Molecular metabolism 32, 109-121, 2020 | 113 | 2020 |
Genome-wide association study of plasma lipoprotein (a) levels identifies multiple genes on chromosome 6q C Ober, AS Nord, EE Thompson, L Pan, Z Tan, D Cusanovich, Y Sun, ... Journal of lipid research 50 (5), 798-806, 2009 | 110 | 2009 |
The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes DA Cusanovich, C Billstrand, X Zhou, C Chavarria, S De Leon, ... Human molecular genetics 21 (9), 2111-2123, 2012 | 57 | 2012 |
Regulatory element copy number differences shape primate expression profiles RC Iskow, O Gokcumen, A Abyzov, J Malukiewicz, Q Zhu, AT Sukumar, ... Proceedings of the National Academy of Sciences 109 (31), 12656-12661, 2012 | 47 | 2012 |
Breast tumor stiffness instructs bone metastasis via maintenance of mechanical conditioning AW Watson, AD Grant, SS Parker, S Hill, MB Whalen, J Chakrabarti, ... Cell reports 35 (13), 2021 | 44 | 2021 |
Rhinovirus infections in individuals with asthma increase ACE2 expression and cytokine pathways implicated in COVID-19 EH Chang, AL Willis, CE Romanoski, DA Cusanovich, N Pouladi, J Li, ... American journal of respiratory and critical care medicine 202 (5), 753-755, 2020 | 25 | 2020 |
Integrated analyses of gene expression and genetic association studies in a founder population DA Cusanovich, M Caliskan, C Billstrand, K Michelini, C Chavarria, ... Human molecular genetics 25 (10), 2104-2112, 2016 | 22 | 2016 |