| PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways A Bhattacharya, JD Ziebarth, Y Cui Nucleic acids research 42 (D1), D86-D91, 2014 | 365 | 2014 |
| nsSNPAnalyzer: identifying disease-associated nonsynonymous single nucleotide polymorphisms L Bao, M Zhou, Y Cui Nucleic acids research 33 (suppl 2), W480-W482, 2005 | 247 | 2005 |
| Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information L Bao, Y Cui Bioinformatics 21 (10), 2185-2190, 2005 | 194 | 2005 |
| PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits L Bao, M Zhou, L Wu, L Lu, D Goldowitz, RW Williams, Y Cui Nucleic acids research 35 (suppl 1), D51-D54, 2007 | 173 | 2007 |
| CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization JD Ziebarth, A Bhattacharya, Y Cui Nucleic acids research 41 (D1), D188-D194, 2013 | 169 | 2013 |
| Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression W Deng, X Zhu, G Skogerbø, Y Zhao, Z Fu, Y Wang, H He, L Cai, H Sun, ... Genome research 16 (1), 20-29, 2006 | 155 | 2006 |
| PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits JD Ziebarth, A Bhattacharya, A Chen, Y Cui Nucleic acids research 40 (D1), D216-D221, 2012 | 141 | 2012 |
| CTCFBSDB: a CTCF-binding site database for characterization of vertebrate genomic insulators L Bao, M Zhou, Y Cui Nucleic acids research 36 (suppl 1), D83-D87, 2008 | 133 | 2008 |
| Transfer Learning for Molecular Cancer classification using Deep Neural Networks RK Sevakula, V Singh, NK Verma, C Kumar, Y Cui IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018 | 127 | 2018 |
| Protein folding simulation with genetic algorithm and supersecondary structure constraints Y Cui, RS Chen, WH Wong Proteins Structure Function and Genetics 31 (3), 247-257, 1998 | 121 | 1998 |
| SomamiR 2.0: a database of cancer somatic mutations altering microRNA–ceRNA interactions A Bhattacharya, Y Cui Nucleic acids research 44 (D1), D1005-D1010, 2016 | 119 | 2016 |
| Recombinatoric exploration of novel folded structures: A heteropolymer-based model of protein evolutionary landscapes Y Cui, WH Wong, E Bornberg-Bauer, HS Chan Proceedings of the National Academy of Sciences 99 (2), 809-814, 2002 | 115 | 2002 |
| Inferring gene transcriptional modulatory relations: a genetical genomics approach H Li, L Lu, KF Manly, EJ Chesler, L Bao, J Wang, M Zhou, RW Williams, ... Human molecular genetics 14 (9), 1119-1125, 2005 | 106 | 2005 |
| Deep transfer learning for reducing health care disparities arising from biomedical data inequality Y Gao, Y Cui Nature Communications 11 (1), 1-8, 2020 | 91 | 2020 |
| Integrative analysis of somatic mutations altering microRNA targeting in cancer genomes JD Ziebarth, A Bhattacharya, Y Cui PloS one 7 (10), e47137, 2012 | 83 | 2012 |
| SomamiR: a database for somatic mutations impacting microRNA function in cancer A Bhattacharya, JD Ziebarth, Y Cui Nucleic acids research 41 (D1), D977-D982, 2013 | 81 | 2013 |
| Pre‐transplant predictors of one yr weight gain after kidney transplantation AK Cashion, DK Hathaway, A Stanfill, F Thomas, JD Ziebarth, Y Cui, ... Clinical transplantation 28 (11), 1271-1278, 2014 | 63 | 2014 |
| Integrative genetic analysis of transcription modules: towards filling the gap between genetic loci and inherited traits H Li, H Chen, L Bao, KF Manly, EJ Chesler, L Lu, J Wang, M Zhou, ... Human molecular genetics 15 (3), 481-492, 2006 | 56 | 2006 |
| Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray H He, L Cai, G Skogerbø, W Deng, T Liu, X Zhu, Y Wang, D Jia, Z Zhang, ... Nucleic acids research 34 (10), 2976-2983, 2006 | 48 | 2006 |
| miRNA biogenesis enzyme Drosha is required for vascular smooth muscle cell survival P Fan, Z Chen, P Tian, W Liu, Y Jiao, Y Xue, A Bhattacharya, J Wu, M Lu, ... PloS one 8 (4), e60888, 2013 | 47 | 2013 |
