Critical assessment of automated flow cytometry data analysis techniques N Aghaeepour, G Finak, D Dougall, K AH, P Mah, G Obermoser, J Spidlen, ... Nature Methods 10, 228–238, 2013 | 673 | 2013 |
GLI1-expressing mesenchymal cells form the essential Wnt-secreting niche for colon stem cells B Degirmenci, T Valenta, S Dimitrieva, G Hausmann, K Basler Nature 558 (7710), 449-453, 2018 | 357 | 2018 |
UCNEbase—a database of ultraconserved non-coding elements and genomic regulatory blocks S Dimitrieva, P Bucher Nucleic acids research 41 (D1), D101-D109, 2013 | 123 | 2013 |
Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT) D Gerber, JA Pereira, J Gerber, G Tan, S Dimitrieva, E Yángüez, U Suter Elife 10, e58591, 2021 | 104 | 2021 |
FASN-dependent lipid metabolism links neurogenic stem/progenitor cell activity to learning and memory deficits M Bowers, T Liang, D Gonzalez-Bohorquez, S Zocher, BN Jaeger, ... Cell stem cell 27 (1), 98-109. e11, 2020 | 73 | 2020 |
Sensitive Quantitative Proteomics of Human Hematopoietic Stem and Progenitor Cells by Data-independent Acquisition Mass Spectrometry*[S] S Amon, F Meier-Abt, LC Gillet, S Dimitrieva, APA Theocharides, ... Molecular & Cellular Proteomics 18 (7), 1454-1467, 2019 | 51 | 2019 |
Prognostic value of cross-omics screening for kidney clear cell renal cancer survival S Dimitrieva, R Schlapbach, H Rehrauer Biology direct 11, 1-15, 2016 | 35 | 2016 |
Classification of selectively constrained DNA elements using feature vectors and rule-based classifiers D Polychronopoulos, E Weitschek, S Dimitrieva, P Bucher, G Felici, ... Genomics 104 (2), 79-86, 2014 | 32 | 2014 |
Genomic context analysis reveals dense interaction network between vertebrate ultraconserved non-coding elements S Dimitrieva, P Bucher Bioinformatics 28 (18), i395-i401, 2012 | 26 | 2012 |
Unraveling patterns of site-to-site synonymous rates variation and associated gene properties of protein domains and families S Dimitrieva, M Anisimova PLoS One 9 (6), e95034, 2014 | 23 | 2014 |
Practicality and time complexity of a sparsified RNA folding algorithm S Dimitrieva, P Bucher Journal of bioinformatics and computational biology 10 (02), 1241007, 2012 | 13 | 2012 |
Probabilistic machine learning ensures accurate ambient denoising in droplet-based single-cell omics C Sheng, R Lopes, G Li, S Schuierer, A Waldt, R Cuttat, S Dimitrieva, ... BioRxiv, 2022.01. 14.476312, 2022 | 12 | 2022 |
PANDITplus: toward better integration of evolutionary view on molecular sequences with supplementary bioinformatics resources S Dimitrieva, M Anisimova Trends in Evolutionary Biology 2 (1), e1, 2010 | 10 | 2010 |
Biologically relevant integration of transcriptomics profiles from cancer cell lines, patient-derived xenografts and clinical tumors using deep learning S Dimitrieva, R Janssens, G Li, A Szalata, R Gopal, C Parmar, ... bioRxiv, 2022.09. 07.506964, 2022 | 2 | 2022 |
Ultra-sensitive proteome profiling of FACS-isolated cell populations by data-independent acquisition-MS: Application to human hematopoietic stem and progenitor cells S Amon, F Meier-Abt, LC Gillet, S Dimitrieva, APA Theocharides, ... bioRxiv, 371161, 2018 | 1 | 2018 |
Predicting metastatic transcriptomes of patient tumors with deep learning G Li, E Béal, D Sumner, GG Galli, V Cremasco, JM Korn, F Dondelinger, ... Cancer Research 84 (6_Supplement), 896-896, 2024 | | 2024 |
The OHANA Project: Target Cancer, One Cell at a Time D Ruddy, A Liss, V Cremasco, J Harrison, J Chang, S Dimitrieva, M Piquet, ... PANCREAS 50 (7), 1093-1093, 2021 | | 2021 |
903 SINGLE-CELL RNA SEQUENCING ANALYSIS OF PANCREATIC DUCTAL ADENOCARCINOMA REVEALS TRANSCRIPTOMIC CHANGES IN FIBROBLASTS FOLLOWING FOLFIRINOX-BASED NEOADJUVANT CHEMORADIATION … J Harrison, JE Chang, M Piquet, S Dimitrieva, M Gabriel, KD Lillemoe, ... Gastroenterology 160 (6), S-903, 2021 | | 2021 |
797 SINGLE-CELL RNA SEQUENCING ANALYSIS OF PANCREATIC DUCTAL ADENOCARCINOMA REVEALS INTERTUMORAL TRANSCRIPTOMIC HETEROGENEITY J Harrison, JE Chang, M Piquet, S Dimitrieva, M Gabriel, TP Hank, ... Gastroenterology 158 (6), S-1528, 2020 | | 2020 |
PF453 TRANSCRIPTOME‐PROTEOME CORRELATION IN HUMAN HEMATOPOIETIC STEM AND PROGENITOR CELLS F Meier‐Abt, S Amon, L Gillet, W Wolski, S Dimitrieva, A Theocharides, ... HemaSphere 3, 178, 2019 | | 2019 |