Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis A Viehweger, S Krautwurst, K Lamkiewicz, R Madhugiri, J Ziebuhr, ... Genome research 29 (9), 1545-1554, 2019 | 234 | 2019 |
De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers M Hölzer, M Marz GigaScience 8 (5), giz039, 2019 | 208* | 2019 |
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ... Briefings in bioinformatics 22 (2), 642-663, 2021 | 145 | 2021 |
Integrating cultivation and metagenomics for a multi-kingdom view of skin microbiome diversity and functions S Saheb Kashaf, DM Proctor, C Deming, P Saary, M Hölzer, ME Taylor, ... Nature microbiology 7 (1), 169-179, 2022 | 88 | 2022 |
Chlamydia buteonis, a new Chlamydia species isolated from a red-shouldered hawk K Laroucau, F Vorimore, R Aaziz, L Solmonson, RC Hsia, PM Bavoil, ... Systematic and applied microbiology 42 (5), 125997, 2019 | 70 | 2019 |
Cohesin-mediated NF-κB signaling limits hematopoietic stem cell self-renewal in aging and inflammation Z Chen, EM Amro, F Becker, M Hölzer, SMM Rasa, SN Njeru, B Han, ... Journal of Experimental Medicine 216 (1), 152-175, 2019 | 68 | 2019 |
Evolution and antiviral specificity of interferon-induced Mx proteins of bats against Ebola-, Influenza-, and other RNA viruses. J Fuchs, M Hölzer, A Schilling, Mirjam: Patzina, Corinna: Schoen, ... Journal of Virology, 2017 | 66 | 2017 |
EpiDope: A Deep neural network for linear B-cell epitope prediction M Collatz, F Mock, E Barth, M Hölzer, K Sachse, M Marz Bioinformatics 37 (4), 448-455, 2021 | 65 | 2021 |
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ... Scientific reports 6 (1), 34589, 2016 | 64 | 2016 |
Inclusion of Oxford Nanopore long reads improves all microbial and viral metagenome‐assembled genomes from a complex aquifer system WA Overholt, M Hölzer, P Geesink, C Diezel, M Marz, K Küsel Environmental Microbiology 22 (9), 4000-4013, 2020 | 58 | 2020 |
The economical lifestyle of CPR bacteria in groundwater allows little preference for environmental drivers NM Chaudhari, WA Overholt, PA Figueroa-Gonzalez, M Taubert, ... Environmental microbiome 16, 1-18, 2021 | 45 | 2021 |
Massive effect on lncRNAs in human monocytes during fungal and bacterial infections and in response to vitamins A and D K Riege, M Hölzer, TE Klassert, E Barth, J Bräuer, M Collatz, F Hufsky, ... Scientific reports 7, 40598, 2017 | 37 | 2017 |
poreCov-an easy to use, fast, and robust workflow for SARS-CoV-2 genome reconstruction via nanopore sequencing C Brandt, S Krautwurst, R Spott, M Lohde, M Jundzill, M Marquet, ... Frontiers in Genetics, 1397, 2021 | 34 | 2021 |
Carbon fixation rates in groundwater similar to those in oligotrophic marine systems WA Overholt, S Trumbore, X Xu, TLV Bornemann, AJ Probst, M Krüger, ... Nature Geoscience 15 (7), 561-567, 2022 | 33 | 2022 |
Evaluation of Sequencing Library Preparation Protocols for Viral Metagenomic Analysis from Pristine Aquifer Groundwaters R Kallies, M Hölzer, R Brizola Toscan, U Nunes da Rocha, J Anders, ... Viruses 11 (6), 484, 2019 | 32 | 2019 |
Evidence for the existence of a new genus Chlamydiifrater gen. nov. inside the family Chlamydiaceae with two new species isolated from flamingo (Phoenicopterus roseus … F Vorimore, M Hölzer, EM Liebler-Tenorio, LM Barf, S Delannoy, ... Systematic and applied microbiology 44 (4), 126200, 2021 | 30 | 2021 |
Virus-and Interferon Alpha-Induced Transcriptomes of Cells from the Microbat Myotis daubentonii M Hölzer, A Schoen, J Wulle, MA Müller, C Drosten, M Marz, F Weber iScience 19, 647-661, 2019 | 30 | 2019 |
Comparative Genome Analysis of 33 Chlamydia Strains Reveals Characteristic Features of Chlamydia Psittaci and Closely Related Species M Hölzer, LM Barf, K Lamkiewicz, F Vorimore, M Lataretu, A Favaroni, ... Pathogens 9 (11), 899, 2020 | 28 | 2020 |
Software Dedicated to Virus Sequence Analysis "Bioinformatics Goes Viral" M Hölzer, M Marz Advances in Virus Research 99, 233-257, 2017 | 28 | 2017 |
Antibody escape and global spread of SARS-CoV-2 lineage A. 27 T Kaleta, L Kern, SL Hong, M Hölzer, G Kochs, J Beer, D Schnepf, ... Nature communications 13 (1), 1152, 2022 | 27 | 2022 |