| Acquired bloodstream infection in the intensive care unit: incidence and attributable mortality JR Prowle, JE Echeverri, EV Ligabo, N Sherry, GC Taori, TM Crozier, ... Critical Care 15, 1-11, 2011 | 247 | 2011 |
| Tracking the COVID-19 pandemic in Australia using genomics T Seemann, CR Lane, NL Sherry, S Duchene, A Gonçalves da Silva, ... Nature communications 11 (1), 1-9, 2020 | 190 | 2020 |
| Outbreak investigation using high-throughput genome sequencing within a diagnostic microbiology laboratory NL Sherry, JL Porter, T Seemann, A Watkins, TP Stinear, BP Howden Journal of clinical microbiology 51 (5), 1396-1401, 2013 | 113 | 2013 |
| Emerging Gram negative resistance to last-line antimicrobial agents fosfomycin, colistin and ceftazidime-avibactam–epidemiology, laboratory detection and treatment implications N Sherry, B Howden Expert review of anti-infective therapy 16 (4), 289-306, 2018 | 102 | 2018 |
| Genomics for Molecular Epidemiology and Detecting Transmission of Carbapenemase-Producing Enterobacterales in Victoria, Australia, 2012 to 2016 NL Sherry, CR Lane, JC Kwong, M Schultz, M Sait, K Stevens, S Ballard, ... Journal of Clinical Microbiology 57 (9), 10.1128/jcm. 00573-19, 2019 | 73 | 2019 |
| Validation of a single-step, single-tube reverse transcription loop-mediated isothermal amplification assay for rapid detection of SARS-CoV-2 RNA JYH Lee, N Best, J McAuley, JL Porter, T Seemann, MB Schultz, M Sait, ... Journal of medical microbiology 69 (9), 1169-1178, 2020 | 70 | 2020 |
| Translating genomics into practice for real-time surveillance and response to carbapenemase-producing Enterobacteriaceae: evidence from a complex multi-institutional KPC outbreak JC Kwong, CR Lane, F Romanes, AG da Silva, M Easton, K Cronin, ... PeerJ 6, e4210, 2018 | 70 | 2018 |
| Genomics-informed responses in the elimination of COVID-19 in Victoria, Australia: an observational, genomic epidemiological study CR Lane, NL Sherry, AF Porter, S Duchene, K Horan, P Andersson, ... The Lancet Public Health 6 (8), e547-e556, 2021 | 59 | 2021 |
| An ISO-certified genomics workflow for identification and surveillance of antimicrobial resistance NL Sherry, KA Horan, SA Ballard, A Gonҫalves da Silva, CL Gorrie, ... Nature communications 14 (1), 60, 2023 | 47 | 2023 |
| An implementation science approach to evaluating pathogen whole genome sequencing in public health AS Ferdinand, M Kelaher, CR Lane, AG da Silva, NL Sherry, SA Ballard, ... Genome medicine 13, 1-11, 2021 | 46 | 2021 |
| Key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria: a systematic analysis CL Gorrie, AG Da Silva, DJ Ingle, C Higgs, T Seemann, TP Stinear, ... The Lancet Microbe 2 (11), e575-e583, 2021 | 43 | 2021 |
| Prolonged Outbreak of Multidrug-Resistant Shigella sonnei Harboring blaCTX-M-27 in Victoria, Australia DJ Ingle, P Andersson, M Valcanis, J Barnden, AG da Silva, KA Horan, ... Antimicrobial Agents and Chemotherapy 64 (12), 10.1128/aac. 01518-20, 2020 | 38 | 2020 |
| Initial and extended use of femoral versus nonfemoral double-lumen vascular catheters and catheter-related infection during continuous renal replacement therapy HR Chua, AG Schneider, NL Sherry, N Lotfy, MJ Chan, J Galtieri, ... American journal of kidney diseases 64 (6), 909-917, 2014 | 37 | 2014 |
| Staff to staff transmission as a driver of healthcare worker infections with COVID-19 CL Gordon, JA Trubiano, NE Holmes, KYL Chua, J Feldman, G Young, ... Infection, disease & health 26 (4), 276-283, 2021 | 35 | 2021 |
| Optimising genomic approaches for identifying vancomycin-resistant Enterococcus faecium transmission in healthcare settings C Higgs, NL Sherry, T Seemann, K Horan, H Walpola, P Kinsella, K Bond, ... Nature communications 13 (1), 509, 2022 | 28 | 2022 |
| Comprehensive genomic investigation of adaptive mutations driving the low-level oxacillin resistance phenotype in Staphylococcus aureus SG Giulieri, R Guérillot, JC Kwong, IR Monk, AS Hayes, D Daniel, ... MBio 11 (6), 10.1128/mbio. 02882-20, 2020 | 26 | 2020 |
| SARS-CoV-2 infection results in immune responses in the respiratory tract and peripheral blood that suggest mechanisms of disease severity W Zhang, BY Chua, KJ Selva, L Kedzierski, TM Ashhurst, ER Haycroft, ... Nature Communications 13 (1), 2774, 2022 | 23 | 2022 |
| Pilot study of a combined genomic and epidemiologic surveillance program for hospital-acquired multidrug-resistant pathogens across multiple hospital networks in Australia NL Sherry, RS Lee, CL Gorrie, JC Kwong, RL Stuart, TM Korman, ... Infection Control & Hospital Epidemiology 42 (5), 573-581, 2021 | 20 | 2021 |
| Search and contain: impact of an integrated genomic and epidemiological surveillance and response program for control of carbapenemase-producing Enterobacterales CR Lane, J Brett, M Schultz, CL Gorrie, K Stevens, DRM Cameron, ... Clinical Infectious Diseases 73 (11), e3912-e3920, 2021 | 18 | 2021 |
| Genomic epidemiology and antimicrobial resistance mechanisms of imported typhoid in Australia DJ Ingle, P Andersson, M Valcanis, M Wilmot, M Easton, C Lane, ... Antimicrobial Agents and Chemotherapy 65 (12), 10.1128/aac. 01200-21, 2021 | 17 | 2021 |
