Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle EF Kirkness, BJ Haas, W Sun, HR Braig, MA Perotti, JM Clark, SH Lee, ... Proceedings of the National Academy of Sciences 107 (27), 12168, 2010 | 572 | 2010 |
Emerging priorities for microbiome research CM Cullen, KK Aneja, S Beyhan, CE Cho, S Woloszynek, M Convertino, ... Frontiers in microbiology 11, 491374, 2020 | 167 | 2020 |
The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation M Rendón-Anaya, E Ibarra-Laclette, A Méndez-Bravo, T Lan, C Zheng, ... Proceedings of the National Academy of Sciences 116 (34), 17081-17089, 2019 | 152 | 2019 |
Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory K Fukushima, X Fang, D Alvarez-Ponce, H Cai, L Carretero-Paulet, ... Nature Ecology & Evolution 1 (3), 0059, 2017 | 122 | 2017 |
Network-level molecular evolutionary analysis of the insulin/TOR signal transduction pathway across 12 Drosophila genomes D Alvarez-Ponce, M Aguadé, J Rozas Genome research 19 (2), 234-242, 2009 | 95 | 2009 |
Gene similarity networks provide tools for understanding eukaryote origins and evolution D Alvarez-Ponce, P Lopez, E Bapteste, JO McInerney Proceedings of the National Academy of Sciences 110 (17), E1594-E1603, 2013 | 86 | 2013 |
Phylogenetic distribution of CMP-Neu5Ac hydroxylase (CMAH), the enzyme synthetizing the proinflammatory human xenoantigen Neu5Gc S Peri, A Kulkarni, F Feyertag, PM Berninsone, D Alvarez-Ponce Genome biology and evolution 10 (1), 207-219, 2018 | 81 | 2018 |
The molecular chaperone DnaK is a source of mutational robustness J Aguilar-Rodríguez, B Sabater-Munoz, R Montagud-Martínez, ... Genome biology and evolution 8 (9), 2979-2991, 2016 | 67 | 2016 |
Evolutionary rate and duplicability in the Arabidopsis thaliana protein–protein interaction network D Alvarez-Ponce, MA Fares Genome Biology and Evolution, 2012 | 64 | 2012 |
Recent positive selection has acted on genes encoding proteins with more interactions within the whole human interactome P Luisi, D Alvarez-Ponce, M Pybus, MA Fares, J Bertranpetit, H Laayouni Genome Biology and Evolution 7 (4), 1141-1154, 2015 | 60 | 2015 |
Comparative genomics of the vertebrate insulin/TOR signal transduction pathway: a network-level analysis of selective pressures D Alvarez-Ponce, M Aguade, J Rozas Genome biology and evolution 3, 87-101, 2011 | 48 | 2011 |
Position matters: network centrality considerably impacts rates of protein evolution in the human protein–protein interaction network D Alvarez-Ponce, F Feyertag, S Chakraborty Genome biology and evolution 9 (6), 1742-1756, 2017 | 41 | 2017 |
Chance and necessity in the genome evolution of endosymbiotic bacteria of insects B Sabater-Muñoz, C Toft, D Alvarez-Ponce, MA Fares The ISME Journal 11 (6), 1291-1304, 2017 | 38 | 2017 |
Network-level and population genetics analysis of the insulin/TOR signal transduction pathway across human populations P Luisi, D Alvarez-Ponce, GM Dall’Olio, M Sikora, J Bertranpetit, ... Molecular biology and evolution 29 (5), 1379-1392, 2012 | 37 | 2012 |
Molecular chaperones accelerate the evolution of their protein clients in yeast D Alvarez-Ponce, J Aguilar-Rodríguez, MA Fares Genome biology and evolution 11 (8), 2360-2375, 2019 | 30 | 2019 |
The human genome retains relics of its prokaryotic ancestry: human genes of archaebacterial and eubacterial origin exhibit remarkable differences D Alvarez-Ponce, JO McInerney Genome biology and evolution 3, 782-790, 2011 | 30 | 2011 |
The relationship between the hierarchical position of proteins in the human signal transduction network and their rate of evolution D Alvarez-Ponce BMC evolutionary biology 12, 1-15, 2012 | 28 | 2012 |
Essentiality Is a Strong Determinant of Protein Rates of Evolution during Mutation Accumulation Experiments in Escherichia coli D Alvarez-Ponce, B Sabater-Munoz, C Toft, MX Ruiz-Gonzalez, MA Fares Genome biology and evolution 8 (9), 2914-2927, 2016 | 27 | 2016 |
Molecular Population Genetics of the Insulin/TOR Signal Transduction Pathway: A Network-Level Analysis in Drosophila melanogaster D Alvarez-Ponce, S Guirao-Rico, DJ Orengo, C Segarra, J Rozas, ... Molecular biology and evolution 29 (1), 123-132, 2012 | 24 | 2012 |
The final piece of the Triangle of U: Evolution of the tetraploid Brassica carinata genome WC Yim, ML Swain, D Ma, H An, KA Bird, DD Curdie, S Wang, HD Ham, ... The Plant Cell 34 (11), 4143-4172, 2022 | 23 | 2022 |