| Membrane protein-regulated networks across human cancers CY Lin, CH Lee, YH Chuang, JY Lee, YY Chiu, YH Wu Lee, YJ Jong, ... Nature communications 10 (1), 3131, 2019 | 80 | 2019 |
| Predicting helix–helix interactions from residue contacts in membrane proteins A Lo, YY Chiu, EA Rødland, PC Lyu, TY Sung, WL Hsu Bioinformatics 25 (8), 996-1003, 2009 | 72 | 2009 |
| Module organization and variance in protein-protein interaction networks CY Lin, TL Lee, YY Chiu, YW Lin, YS Lo, CT Lin, JM Yang Scientific reports 5 (1), 9386, 2015 | 32 | 2015 |
| KIDFamMap: a database of kinase-inhibitor-disease family maps for kinase inhibitor selectivity and binding mechanisms YY Chiu, CT Lin, JW Huang, KC Hsu, JH Tseng, SR You, JM Yang Nucleic acids research 41 (D1), D430-D440, 2013 | 29 | 2013 |
| TMPad: an integrated structural database for helix-packing folds in transmembrane proteins A Lo, CW Cheng, YY Chiu, TY Sung, WL Hsu Nucleic acids research 39 (suppl_1), D347-D355, 2011 | 23 | 2011 |
| Anchor-based classification and type-C inhibitors for tyrosine kinases KC Hsu, TY Sung, CT Lin, YY Chiu, JTA Hsu, HC Hung, CM Sun, I Barve, ... Scientific reports 5 (1), 10938, 2015 | 11 | 2015 |
| An evolutionary approach with pharmacophore-based scoring functions for virtual database screening JM Yang, TW Shen, YF Chen, YY Chiu Genetic and Evolutionary Computation–GECCO 2004: Genetic and Evolutionary …, 2004 | 10 | 2004 |
| Homopharma: a new concept for exploring the molecular binding mechanisms and drug repurposing YY Chiu, JH Tseng, KH Liu, CT Lin, KC Hsu, JM Yang BMC genomics 15, 1-10, 2014 | 9 | 2014 |
| Membrane protein-regulated networks across human cancers. Nat Commun. 2019; 10: 3131 CY Lin, CH Lee, YH Chuang, JY Lee, YY Chiu, YH Wu Lee, YJ Jong, ... | 5 | |
| Space-related pharma-motifs for fast search of protein binding motifs and polypharmacological targets YY Chiu, CY Lin, CT Lin, KC Hsu, LZ Chang, JM Yang Bmc Genomics 13, 1-11, 2012 | 4 | 2012 |
| An integrated genomic strategy to identify CHRNB4 as a diagnostic/prognostic biomarker for targeted therapy in head and neck cancer YH Chuang, CH Lee, CY Lin, CL Liu, SH Huang, JY Lee, YY Chiu, JC Lee, ... Cancers 12 (5), 1324, 2020 | 2 | 2020 |
| GEMSCORE: A new empirical energy function for protein folding YY Chiu, JK Hwang, JM Yang 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and …, 2005 | 1 | 2005 |
| MULISA: ANew STRATEGY FOR DISCOVERY OF PROTEIN FUNCTIONAL MOTIFS AND RESIDUES YY Chiu, CT Lin, CH Lin, JM Yang CS & IT Conference Proceedings 5 (10), 2015 | | 2015 |
| Soft energy function and generic evolutionary method for discriminating native from nonnative protein conformations Y Chiu, J Hwang, J Yang Journal of computational chemistry 29 (9), 1364-1373, 2008 | | 2008 |
| A Generic Evolutionary Method Optimizes Soft Energy Functions for Protein Structure Prediction JM Yang, YY Chiu, JK Hwang Asia Pacific Bioinformatics Network (APBioNet), Clear Water Bay, Kowloon …, 2007 | | 2007 |
