HybPiper: Extracting coding sequence and introns for phylogenetics from high‐throughput sequencing reads using target enrichment MG Johnson, EM Gardner, Y Liu, R Medina, B Goffinet, AJ Shaw, ... Applications in plant sciences 4 (7), 1600016, 2016 | 505 | 2016 |
Presence of three mycorrhizal genes in the common ancestor of land plants suggests a key role of mycorrhizas in the colonization of land by plants B Wang, LH Yeun, JY Xue, Y Liu, JM Ané, YL Qiu New phytologist 186 (2), 514-525, 2010 | 293 | 2010 |
The water lily genome and the early evolution of flowering plants L Zhang, F Chen, X Zhang, Z Li, Y Zhao, R Lohaus, X Chang, W Dong, ... Nature 577 (7788), 79-84, 2020 | 288 | 2020 |
The hornwort genome and early land plant evolution J Zhang, XX Fu, RQ Li, X Zhao, Y Liu, MH Li, A Zwaenepoel, H Ma, ... Nature plants 6 (2), 107-118, 2020 | 228 | 2020 |
Angiosperm phylogeny inferred from sequences of four mitochondrial genes YL QIU, L Li, B Wang, JY XUE, TA Hendry, RQ LI, JW Brown, Y Liu, ... Journal of Systematics and Evolution 48 (6), 391-425, 2010 | 212 | 2010 |
Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes Y Liu, MG Johnson, CJ Cox, R Medina, N Devos, A Vanderpoorten, ... Nature Communications 10 (1), 1485, 2019 | 178 | 2019 |
A genome for gnetophytes and early evolution of seed plants T Wan, ZM Liu, LF Li, AR Leitch, IJ Leitch, R Lohaus, ZJ Liu, HP Xin, ... Nature Plants 4 (2), 82-89, 2018 | 161 | 2018 |
Mitochondrial phylogenomics of early land plants: Mitigating the effects of saturation, compositional heterogeneity, and codon-usage bias Y Liu, CJ Cox, W Wang, B Goffinet Systematic Biology 63, 862-878, 2014 | 131 | 2014 |
The Cycas genome and the early evolution of seed plants Y Liu, S Wang, L Li, T Yang, S Dong, T Wei, S Wu, Y Liu, Y Gong, X Feng, ... Nature Plants 8 (4), 389-401, 2022 | 112 | 2022 |
The complete mitochondrial genome of the early flowering plant Nymphaea colorata is highly repetitive with low recombination S Dong, C Zhao, F Chen, Y Liu, S Zhang, H Wu, L Zhang, Y Liu Bmc Genomics 19, 1-12, 2018 | 105 | 2018 |
350 My of Mitochondrial Genome Stasis in Mosses, an Early Land Plant Lineage Y Liu, R Medina, B Goffinet Molecular Biology and Evolution 31, 2586-2591, 2014 | 102 | 2014 |
Menispermaceae and the diversification of tropical rainforests near the Cretaceous–Paleogene boundary W Wang, RDC Ortiz, F Jacques, XG Xiang, HL Li, L Lin, RQ Li, Y Liu, ... New Phytologist, 2012 | 99 | 2012 |
The Complete Mitochondrial Genome Sequence of the Hornwort Megacerosaenigmaticus Shows a Mixed Mode of Conservative Yet Dynamic Evolution in Early Land Plant Mitochondrial Genomes L Li, B Wang, Y Liu, YL Qiu Journal of molecular evolution 68 (6), 665-678, 2009 | 99 | 2009 |
Phylogenetic and biogeographic diversification of Berberidaceae in the Northern Hemisphere W Wang, ZD Chen, Y Liu, RQ Li, JH Li Systematic Botany 32 (4), 731-742, 2007 | 95 | 2007 |
The mitochondrial genomes of the early land plants Treubia lacunosa and Anomodon rugelii: dynamic and conservative evolution Y Liu, JY Xue, B Wang, L Li, YL Qiu PLoS One 6 (10), e25836, 2011 | 93 | 2011 |
The complete mitochondrial genome sequence of the hornwort Phaeoceros laevis: retention of many ancient pseudogenes and conservative evolution of mitochondrial genomes in hornworts JY Xue, Y Liu, L Li, B Wang, YL Qiu Current genetics 56 (1), 53-61, 2010 | 91 | 2010 |
Whole-genome resequencing of 445 Lactuca accessions reveals the domestication history of cultivated lettuce T Wei, R Van Treuren, X Liu, Z Zhang, J Chen, Y Liu, S Dong, P Sun, ... Nature Genetics 53 (5), 752-760, 2021 | 88 | 2021 |
Phylogenomic delineation of Physcomitrium (Bryophyta: Funariaceae) based on targeted sequencing of nuclear exons and their flanking regions rejects the retention of … R Medina, MG Johnson, Y Liu, NJ Wickett, AJ Shaw, B Goffinet Journal of Systematics and Evolution 57 (4), 404-417, 2019 | 78 | 2019 |
Large-scale phylogenetic analyses reveal fagalean diversification promoted by the interplay of diaspores and environments in the Paleogene XG Xiang, W Wang, RQ Li, L Lin, Y Liu, ZK Zhou, ZY Li, ZD Chen Perspectives in Plant Ecology, Evolution and Systematics 16 (3), 101-110, 2014 | 73 | 2014 |
Haplotype-resolved genome of diploid ginger (Zingiber officinale) and its unique gingerol biosynthetic pathway HL Li, L Wu, Z Dong, Y Jiang, S Jiang, H Xing, Q Li, G Liu, S Tian, Z Wu, ... Horticulture Research 8, 2021 | 72 | 2021 |