Minimum information about a microarray experiment (MIAME)—toward standards for microarray data A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, ... Nature genetics 29 (4), 365-371, 2001 | 4916 | 2001 |
An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics RC Taylor BMC bioinformatics 11, 1-6, 2010 | 706 | 2010 |
Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling CJ Castelle, KC Wrighton, BC Thomas, LA Hug, CT Brown, MJ Wilkins, ... Current biology 25 (6), 690-701, 2015 | 574 | 2015 |
Standards for microarray data CA Ball, G Sherlock, H Parkinson, P Rocca-Sera, C Brooksbank, ... Science 298 (5593), 539-539, 2002 | 215 | 2002 |
The Toxoplasma gondii Cyst Wall Protein CST1 Is Critical for Cyst Wall Integrity and Promotes Bradyzoite Persistence T Tomita, DJ Bzik, YF Ma, BA Fox, LM Markillie, RC Taylor, K Kim, ... PLoS pathogens 9 (12), e1003823, 2013 | 165 | 2013 |
Submission of microarray data to public repositories CA Ball, A Brazma, H Causton, S Chervitz, R Edgar, P Hingamp, ... PLoS biology 2 (9), e317, 2004 | 154 | 2004 |
Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1 KM DeAngelis, D Sharma, R Varney, B Simmons, NG Isern, LM Markilllie, ... Frontiers in Microbiology 4, 280, 2013 | 140 | 2013 |
Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE) EW Deutsch, CA Ball, JJ Berman, GS Bova, A Brazma, RE Bumgarner, ... Nature biotechnology 26 (3), 305-312, 2008 | 131 | 2008 |
Microbial community metabolic modeling: a community data‐driven network reconstruction CS Henry, HC Bernstein, P Weisenhorn, RC Taylor, JY Lee, J Zucker, ... Journal of cellular physiology 231 (11), 2339-2345, 2016 | 114 | 2016 |
GEST: a gene expression search tool based on a novel Bayesian similarity metric L Hunter, RC Taylor, SM Leach, R Simon Bioinformatics 17 (suppl_1), S115-S122, 2001 | 106 | 2001 |
The frameshift signal of HIV-1 involves a potential intramolecular triplex RNA structure JD Dinman, S Richter, EP Plant, RC Taylor, AB Hammell, TM Rana Proceedings of the National Academy of Sciences 99 (8), 5331-5336, 2002 | 104 | 2002 |
Data standards for Omics data: the basis of data sharing and reuse SA Chervitz, EW Deutsch, D Field, H Parkinson, J Quackenbush, ... Bioinformatics for Omics Data: Methods and Protocols, 31-69, 2011 | 97 | 2011 |
Network inference algorithms elucidate Nrf2 regulation of mouse lung oxidative stress RC Taylor, G Acquaah-Mensah, M Singhal, D Malhotra, S Biswal PLoS computational biology 4 (8), e1000166, 2008 | 96 | 2008 |
Reverse engineering adverse outcome pathways EJ Perkins, JK Chipman, S Edwards, T Habib, F Falciani, R Taylor, ... Environmental toxicology and chemistry 30 (1), 22-38, 2011 | 86 | 2011 |
Identification of putative programmed− 1 ribosomal frameshift signals in large DNA databases AB Hammell, RC Taylor, SW Peltz, JD Dinman Genome research 9 (5), 417-427, 1999 | 85 | 1999 |
The highly conserved MraZ protein is a transcriptional regulator in Escherichia coli JM Eraso, LM Markillie, HD Mitchell, RC Taylor, G Orr, W Margolin Journal of bacteriology 196 (11), 2053-2066, 2014 | 79 | 2014 |
Bottlenecks and Hubs in Inferred Networks Are Important for Virulence in Salmonella typhimurium JE McDermott, RC Taylor, H Yoon, F Heffron Journal of Computational Biology 16 (2), 169-180, 2009 | 68 | 2009 |
DNA correlations. PJ Munson, RC Taylor, GS Michaels Nature 360 (6405), 636-636, 1992 | 65 | 1992 |
Changes in translational efficiency is a dominant regulatory mechanism in the environmental response of bacteria RC Taylor, BJM Webb Robertson, LM Markillie, MH Serres, BE Linggi, ... Integrative biology 5 (11), 1393-1406, 2013 | 57 | 2013 |
Distinct Strains of Toxoplasma gondii Feature Divergent Transcriptomes Regardless of Developmental Stage MMK Croken, Y Ma, LM Markillie, RC Taylor, G Orr, LM Weiss, K Kim PLoS One 9 (11), e111297, 2014 | 41 | 2014 |