Cross-talk Between Iron and Nitrogen Regulatory Networks in Anabaena (Nostoc) sp. PCC 7120: Identification of Overlapping Genes in FurA and NtcA Regulons S López-Gomollón, JA Hernández, S Pellicer, VE Angarica, ML Peleato, ... Journal of Molecular Biology 374 (1), 267-281, 2007 | 129 | 2007 |
Discovering putative prion sequences in complete proteomes using probabilistic representations of Q/N-rich domains VE Angarica, S Ventura, J Sancho BMC Genomics 14 (1), 316, 2013 | 78* | 2013 |
Prediction of disease–gene–drug relationships following a differential network analysis S Zickenrott, VE Angarica, BB Upadhyaya, A Del Sol Cell death & disease 7 (1), e2040-e2040, 2016 | 76 | 2016 |
Structure of RdxA – an oxygen‐insensitive nitroreductase essential for metronidazole activation in Helicobacter pylori M Martínez‐Júlvez, AL Rojas, I Olekhnovich, VE Angarica, PS Hoffman, ... The FEBS journal 279 (23), 4306-4317, 2012 | 67 | 2012 |
Bioinformatics tools for genome-wide epigenetic research VE Angarica, A Del Sol Neuroepigenomics in Aging and Disease, 489-512, 2017 | 66 | 2017 |
Identifying potential novel drugs against Helicobacter pylori by targeting the essential response regulator HsrA A González, S Salillas, A Velázquez-Campoy, V Espinosa Angarica, ... Scientific reports 9 (1), 11294, 2019 | 63 | 2019 |
Prediction of TF target sites based on atomistic models of protein-DNA complexes V Angarica, A Pérez, A Vasconcelos, J Collado-Vides, ... BMC Bioinformatics 9 (1), 436, 2008 | 60 | 2008 |
The FurA regulon in Anabaena sp. PCC 7120: in silico prediction and experimental validation of novel target genes A González, VE Angarica, J Sancho, MF Fillat Nucleic Acids Research 42 (8), 4833-46, 2014 | 54 | 2014 |
The role of DNA-binding specificity in the evolution of bacterial regulatory networks I Lozada-Chávez, VE Angarica, J Collado-Vides, B Contreras-Moreira Journal of Molecular Biology 379 (3), 627-643, 2008 | 53 | 2008 |
Single-cell gene expression analysis reveals regulators of distinct cell subpopulations among developing human neurons J Wang, P Jenjaroenpun, A Bhinge, VE Angarica, A Del Sol, I Nookaew, ... Genome research 27 (11), 1783-1794, 2017 | 44 | 2017 |
Lysine acetyltransferase Tip60 is required for hematopoietic stem cell maintenance A Numata, HS Kwok, QL Zhou, J Li, R Tirado-Magallanes, VE Angarica, ... Blood, The Journal of the American Society of Hematology 136 (15), 1735-1747, 2020 | 40 | 2020 |
PrionScan: an online database of predicted prion domains in complete proteomes VE Angarica, A Angulo, A Giner, G Losilla, S Ventura, J Sancho BMC Genomics 15 (1), 102, 2014 | 38* | 2014 |
Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes AG Perez, VE Angarica, ATR Vasconcelos, J Collado-Vides Nucleic Acids Research 35 (suppl 1), D132-D136, 2007 | 35 | 2007 |
Proneural genes define ground-state rules to regulate neurogenic patterning and cortical folding S Han, S Okawa, GA Wilkinson, H Ghazale, L Adnani, R Dixit, L Tavares, ... Neuron 109 (18), 2847-2863. e11, 2021 | 34 | 2021 |
The RNA polymerase II factor RPAP1 is critical for mediator-driven transcription and cell identity CJ Lynch, R Bernad, I Calvo, S Nóbrega-Pereira, S Ruiz, N Ibarz, ... Cell reports 22 (2), 396-410, 2018 | 33 | 2018 |
TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes AD Gonzalez, V Espinosa, AT Vasconcelos, E Perez-Rueda, ... Nucleic Acids Research 33 (suppl 1), D98-D102, 2005 | 32 | 2005 |
Myeloid lncRNA LOUP mediates opposing regulatory effects of RUNX1 and RUNX1-ETO in t(8;21) AML BQ Trinh, S Ummarino, Y Zhang, AK Ebralidze, MA Bassal, TM Nguyen, ... Blood, The Journal of the American Society of Hematology 138 (15), 1331-1344, 2021 | 27 | 2021 |
A differential network analysis approach for lineage specifier prediction in stem cell subpopulations S Okawa, VE Angarica, I Lemischka, K Moore, A Del Sol NPJ systems biology and applications 1 (1), 1-8, 2015 | 27 | 2015 |
Design and Structure of an Equilibrium Protein Folding Intermediate: A Hint into Dynamical Regions of Proteins S Ayuso-Tejedor, VE Angarica, M Bueno, LA Campos, O Abián, ... Journal of Molecular Biology 400 (4), 922-934, 2010 | 27 | 2010 |
Comparative studies of transcriptional regulation mechanisms in a group of eight gamma-proteobacterial genomes V Espinosa, AD Gonzalez, AT Vasconcelos, AM Huerta, J Collado-Vides Journal of Molecular Biology 354 (1), 184-199, 2005 | 24 | 2005 |