| Recent advances in maximum entropy biasing techniques for molecular dynamics DB Amirkulova, AD White Molecular Simulation 45 (14-15), 1285-1294, 2019 | 27 | 2019 |
| Combining enhanced sampling with experiment-directed simulation of the GYG peptide DB Amirkulova, AD White Journal of Theoretical and Computational Chemistry 17 (03), 1840007, 2018 | 11 | 2018 |
| Experimentally Consistent Simulation of Aβ21–30 Peptides with a Minimal NMR Bias DB Amirkulova, M Chakraborty, AD White The Journal of Physical Chemistry B 124 (38), 8266-8277, 2020 | 5 | 2020 |
| Hoomd-tf: Gpu-accelerated, online machine learning in the hoomd-blue molecular dynamics engine R Barrett, M Chakraborty, D Amirkulova, H Gandhi, G Wellawatte, A White Journal of Open Source Software 5 (51), 2020 | 5 | 2020 |
| A GPU-Accelerated Machine Learning Framework for Molecular Simulation: Hoomd-blue with TensorFlow R Barrett, M Chakraborty, D Amirkulova, H Gandhi, A White ChemRxiv, 2019 | 2 | 2019 |
| ERRATUM: Combining enhanced sampling with experiment-directed simulation of the GYG peptide DB Amirkulova, AD White Journal of Theoretical and Computational Chemistry 19 (08), 2092002, 2020 | | 2020 |
| Understanding Structure and Dynamics of Peptides Using Simulations and Experiments DB Amirkulova University of Rochester, 2020 | | 2020 |
| Experimentally Consistent Simulation of Aβ₂₁–₃₀ Peptides with a Minimal NMR Bias DB Amirkulova, M Chakraborty, AD White | | 2020 |
| Molecular Dynamics Simulations of Zwitterionic Peptide Self-Assembly D Amirkulova, A White 2019 AIChE Annual Meeting, 2019 | | 2019 |
| Effects of Coexisting Familial Mutants on Wild Type Amyloidβ21-30 Assembly M Chakraborty, H Gandhi, D Amirkulova, A White 2019 AIChE Annual Meeting, 2019 | | 2019 |
| HOOMD-TF: Online Machine Learning in Molecular Dynamics Simulations R Barrett, M Chakraborty, D Amirkulova, H Gandhi, A White 2019 AIChE Annual Meeting, 2019 | | 2019 |
| Measuring configurational entropy of charged amino acids D Amirkulova ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 257, 2019 | | 2019 |
| Free energy landscape with experiment directed simulations and enhanced sampling D Amirkulova ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 256, 2018 | | 2018 |
| Implementing experiment directed simulations D Amirkulova, A White ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 252, 2016 | | 2016 |
