| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1753* | 2020 |
| Genomic basis for RNA alterations in cancer PTC Group, C Calabrese, NR Davidson, D Demircioğlu, NA Fonseca, ... Nature 578 (7793), 129-136, 2020 | 279* | 2020 |
| Haplotype-resolved assembly of diploid genomes without parental data H Cheng, ED Jarvis, O Fedrigo, KP Koepfli, L Urban, NJ Gemmell, H Li Nature Biotechnology, 1-4, 2022 | 195 | 2022 |
| The era of reference genomes in conservation genomics G Formenti, K Theissinger, C Fernandes, I Bista, A Bombarely, C Bleidorn, ... Trends in ecology & evolution 37 (3), 197-202, 2022 | 159 | 2022 |
| The Kipoi repository accelerates community exchange and reuse of predictive models for genomics Ž Avsec, R Kreuzhuber, J Israeli, N Xu, J Cheng, A Shrikumar, A Banerjee, ... Nature biotechnology 37 (6), 592-600, 2019 | 153 | 2019 |
| Sex differences in cancer driver genes and biomarkers CH Li, S Haider, YJ Shiah, K Thai, PC Boutros Cancer research 78 (19), 5527-5537, 2018 | 131 | 2018 |
| Freshwater monitoring by nanopore sequencing L Urban, A Holzer, JJ Baronas, MB Hall, P Braeuninger-Weimer, ... Elife 10, e61504, 2021 | 102 | 2021 |
| How genomics can help biodiversity conservation K Theissinger, C Fernandes, G Formenti, I Bista, PR Berg, C Bleidorn, ... Trends in genetics 39 (7), 545-559, 2023 | 83 | 2023 |
| Sex differences in oncogenic mutational processes CH Li, SD Prokopec, RX Sun, F Yousif, N Schmitz, PC Boutros Nature communications 11 (1), 4330, 2020 | 67 | 2020 |
| Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity SM Linker, L Urban, SJ Clark, M Chhatriwala, S Amatya, DJ McCarthy, ... Genome biology 20, 1-14, 2019 | 67 | 2019 |
| Commonly used Hardy–Weinberg equilibrium filtering schemes impact population structure inferences using RADseq data WS Pearman, L Urban, A Alexander Molecular Ecology Resources 22 (7), 2599-2613, 2022 | 48 | 2022 |
| Germline determinants of the somatic mutation landscape in 2,642 cancer genomes SM Waszak, G Tiao, B Zhu, T Rausch, F Muyas, B Rodriguez-Martin, ... BioRxiv, 208330, 2017 | 34 | 2017 |
| 16S rRNA long-read nanopore sequencing is feasible and reliable for endometrial microbiome analysis A Oberle, L Urban, S Falch-Leis, C Ennemoser, Y Nagai, K Ashikawa, ... Reproductive Biomedicine Online 42 (6), 1097-1107, 2021 | 19 | 2021 |
| Assessing the utility of marine filter feeders for environmental DNA (eDNA) biodiversity monitoring GJ Jeunen, JS Cane, S Ferreira, F Strano, U von Ammon, H Cross, R Day, ... Molecular Ecology Resources 23 (4), 771-786, 2023 | 17 | 2023 |
| Evidence of two deeply divergent co-existing mitochondrial genomes in the Tuatara reveals an extremely complex genomic organization JR Macey, S Pabinger, CG Barbieri, ES Buring, VL Gonzalez, ... Communications biology 4 (1), 116, 2021 | 17 | 2021 |
| Marine environmental DNA (eDNA) for biodiversity assessments: A one-to-one comparison between eDNA and baited remote underwater video (BRUV) surveys GJ Jeunen, L Urban, R Lewis, M Knapp, M Lamare, W Rayment, ... Authorea Preprints, 2020 | 17 | 2020 |
| Species-wide genomics of kākāpō provides tools to accelerate recovery J Guhlin, MF Le Lec, J Wold, E Koot, D Winter, PJ Biggs, SJ Galla, ... Nature ecology & evolution 7 (10), 1693-1705, 2023 | 16* | 2023 |
| Same data, different analysts: variation in effect sizes due to analytical decisions in ecology and evolutionary biology E Gould, HS Fraser, TH Parker, S Nakagawa, SC Griffith, PA Vesk, ... EcoEvoRxiv, 2023 | 15 | 2023 |
| Genomic basis for RNA alterations revealed by whole-genome analyses of 27 cancer types PTC Group, C Calabrese, NR Davidson, NA Fonseca, Y He, A Kahles, ... BioRxiv, 183889, 2018 | 15* | 2018 |
| Real‐time genomics for One Health L Urban, A Perlas, O Francino, J Martí‐Carreras, BA Muga, JW Mwangi, ... Molecular Systems Biology 19 (8), e11686, 2023 | 14 | 2023 |
