Nonequilibrium dynamics and ultraslow relaxation of confined DNA during viral packaging ZT Berndsen, N Keller, S Grimes, PJ Jardine, DE Smith Proceedings of the National Academy of Sciences 111 (23), 8345-8350, 2014 | 94 | 2014 |
Walker-A motif acts to coordinate ATP hydrolysis with motor output in viral DNA packaging D Ortiz, M Ordyan, J Sippy, CS Oh, N Keller, M Feiss, CE Catalano, ... Journal of molecular biology 428 (13), 2709-2729, 2016 | 46 | 2016 |
Repulsive DNA-DNA interactions accelerate viral DNA packaging in phage phi29 N Keller, D Deltoro, S Grimes, PJ Jardine, DE Smith Physical review letters 112 (24), 248101, 2014 | 43 | 2014 |
Towards data-driven simulation modeling for mobile agent-based systems N Keller, X Hu ACM Transactions on Modeling and Computer Simulation (TOMACS) 29 (1), 1-26, 2019 | 27 | 2019 |
Single DNA molecule jamming and history-dependent dynamics during motor-driven viral packaging N Keller, S Grimes, PJ Jardine, DE Smith Nature physics 12 (8), 757-761, 2016 | 27 | 2016 |
Evidence for an electrostatic mechanism of force generation by the bacteriophage T4 DNA packaging motor AD Migliori, N Keller, TI Alam, M Mahalingam, VB Rao, G Arya, DE Smith Nature Communications 5 (1), 4173, 2014 | 27 | 2014 |
Continuous allosteric regulation of a viral packaging motor by a sensor that detects the density and conformation of packaged DNA ZT Berndsen, N Keller, DE Smith Biophysical journal 108 (2), 315-324, 2015 | 25 | 2015 |
Single-molecule measurements of motor-driven viral DNA packaging in bacteriophages Phi29, Lambda, and T4 with optical tweezers N Keller, DJ delToro, DE Smith Molecular Motors: Methods and Protocols, 393-422, 2018 | 12 | 2018 |
Experimental comparison of forces resisting viral DNA packaging and driving DNA ejection N Keller, ZT Berndsen, PJ Jardine, DE Smith Physical Review E 95 (5), 052408, 2017 | 9 | 2017 |
D. delToro, S. Grimes, PJ Jardine, and DE Smith N Keller Phys. Rev. Lett 112, 248101, 2014 | 8 | 2014 |
Agent-based modeling and simulation of child maltreatment and child maltreatment prevention X Hu, N Keller Journal of Artificial Societies and Social Simulation 18 (3), 6, 2015 | 7 | 2015 |
Function of a viral genome packaging motor from bacteriophage T4 is insensitive to DNA sequence Y Mo, N Keller, D delToro, N Ananthaswamy, SC Harvey, VB Rao, ... Nucleic acids research 48 (20), 11602-11614, 2020 | 3 | 2020 |
Role of DNA–DNA sliding friction and nonequilibrium dynamics in viral genome ejection and packaging M Fizari, N Keller, PJ Jardine, DE Smith Nucleic acids research 51 (15), 8060-8069, 2023 | 1 | 2023 |
Parent training resource allocation optimization using an agent-based model of child maltreatment N Keller, X Hu International Conference on Social Computing, Behavioral-Cultural Modeling …, 2013 | 1 | 2013 |
Single Molecule Studies of the Effect of Spermidine on DNA Mechanics and Viral DNA Packaging NA Keller, DE Smith Biophysical Journal 102 (3), 274a, 2012 | 1 | 2012 |
Restricted Mobility and Jamming of Densely Packed DNA Pulled Out from Phage Phi29 Virus Capsids M Fizari, NA Keller, DE Smith Biophysical Journal 120 (3), 221a, 2021 | | 2021 |
Restricted mobility and jamming of densely packed DNA exiting a viral capsid M Fizari, N Keller, D Smith APS March Meeting Abstracts 2021, X14. 004, 2021 | | 2021 |
High GC Content DNA does not Affect Phage T4 DNA Packaging--Test of a Scrunchworm Model for Packaging Motor Function Y Mo, NA Keller, DE Smith Biophysical Journal 118 (3), 188a, 2020 | | 2020 |
NEW BUSINESS D Belcher, L Berman, G Bingham, C Bohan, M Brinton, F Brooks, ... | | 2014 |
Evidence for non-equilibrium dynamics in viral DNA packaging from optical tweezers measurements ZT Berndsen, N Keller, DE Smith Optical Trapping and Optical Micromanipulation X 8810, 419-428, 2013 | | 2013 |