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Eran Agmon
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Modeling the effects of lipid peroxidation during ferroptosis on membrane properties
E Agmon, J Solon, P Bassereau, BR Stockwell
Scientific reports 8 (1), 5155, 2018
2872018
Open-ended evolution: Perspectives from the OEE workshop in York
T Taylor, M Bedau, A Channon, D Ackley, W Banzhaf, G Beslon, E Dolson, ...
Artificial life 22 (3), 408-423, 2016
1532016
Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation
DN Macklin, TA Ahn-Horst, H Choi, NA Ruggero, J Carrera, JC Mason, ...
Science 369 (6502), eaav3751, 2020
1362020
Lipid homeostasis and regulated cell death
E Agmon, BR Stockwell
Current Opinion in Chemical Biology 39, 83-89, 2017
1282017
The structure of ontogenies in a model protocell
E Agmon, AJ Gates, RD Beer
Artificial life 22 (4), 499-517, 2016
27*2016
The evolution and analysis of action switching in embodied agents
E Agmon, RD Beer
Adaptive Behavior, 1059712313511649, 2014
27*2014
Exploring the space of viable configurations in a model of metabolism–boundary co-construction
E Agmon, AJ Gates, V Churavy, RD Beer
Artificial life 22 (2), 153-171, 2016
25*2016
Vivarium: an interface and engine for integrative multiscale modeling in computational biology
E Agmon, RK Spangler, CJ Skalnik, W Poole, SM Peirce, JH Morrison, ...
Bioinformatics 38 (7), 1972-1979, 2022
212022
BioSimulators: a central registry of simulation engines and services for recommending specific tools
B Shaikh, LP Smith, D Vasilescu, G Marupilla, M Wilson, E Agmon, ...
Nucleic acids research 50 (W1), W108-W114, 2022
182022
Modeling the effects of lipid peroxidation during ferroptosis on membrane properties. Sci Rep 8: 5155
E Agmon, J Solon, P Bassereau, BR Stockwell
142018
Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses
CJ Skalnik, SY Cheah, MY Yang, MB Wolff, RK Spangler, L Talman, ...
PLOS Computational Biology 19 (6), e1011232, 2023
13*2023
Lineage selection leads to evolvability at large population sizes
N Virgo, E Agmon, C Fernando
Artificial Life Conference Proceedings, 420-427, 2017
132017
A Multi-Scale Approach to Modeling E. coli Chemotaxis
E Agmon, RK Spangler
Entropy 22 (10), 1101, 2020
112020
Multiscale models of infection
L Talman, E Agmon, SM Peirce, MW Covert
Current Opinion in Biomedical Engineering 11, 102-108, 2019
92019
Building the next generation of virtual cells to understand cellular biology
GT Johnson, E Agmon, M Akamatsu, E Lundberg, B Lyons, W Ouyang, ...
Biophysical Journal 122 (18), 3560-3569, 2023
72023
A forecast for large-scale, predictive biology: Lessons from meteorology
MW Covert, TE Gillies, T Kudo, E Agmon
Cell systems 12 (6), 488-496, 2021
52021
T cell-mediated curation and restructuring of tumor tissue coordinates an effective immune response
JW Hickey, M Haist, N Horowitz, C Caraccio, Y Tan, AJ Rech, ...
Cell Reports 42 (12), 2023
32023
The biological foundations of enactivism: A report on a workshop held at Artificial Life XV
E Agmon, M Egbert, N Virgo
Artificial life 24 (1), 49-55, 2018
32018
Deriving the bodily grounding of living beings with molecular autopoiesis
E Agmon
Adaptive Behavior 28 (1), 35-36, 2020
22020
Structural coupling of a Potts model cell
E Agmon, JA Glazier, RD Beer
Artificial Life Conference Proceedings, 13-20, 2017
22017
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