| Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis JS Johnson, DJ Spakowicz, BY Hong, LM Petersen, P Demkowicz, ... Nature communications 10 (1), 1-11, 2019 | 1491 | 2019 |
| Longitudinal multi-omics of host–microbe dynamics in prediabetes W Zhou, MR Sailani, K Contrepois, Y Zhou, S Ahadi, SR Leopold, ... Nature 569 (7758), 663-671, 2019 | 455 | 2019 |
| Microbiome signatures associated with steatohepatitis and moderate to severe fibrosis in children with nonalcoholic fatty liver disease JB Schwimmer, JS Johnson, JE Angeles, C Behling, PH Belt, I Borecki, ... Gastroenterology 157 (4), 1109-1122, 2019 | 241 | 2019 |
| Disease dynamics over very different time-scales: foot-and-mouth disease and scrapie on the network of livestock movements in the UK RR Kao, DM Green, J Johnson, IZ Kiss Journal of the Royal Society Interface 4 (16), 907-916, 2007 | 194 | 2007 |
| Long noncoding RNAs in B-cell development and activation TF Brazão, JS Johnson, J Müller, A Heger, CP Ponting, VLJ Tybulewicz Blood, The Journal of the American Society of Hematology 128 (7), e10-e19, 2016 | 130 | 2016 |
| CGAT: computational genomics analysis toolkit D Sims, NE Ilott, SN Sansom, IM Sudbery, JS Johnson, KA Fawcett, ... Bioinformatics 30 (9), 1290-1291, 2014 | 76 | 2014 |
| Demographic risk factors for classical and atypical scrapie in Great Britain DM Green, J Victor, CPD Birch, J Johnson, IZ Kiss, ND McCarthy, RR Kao The Journal of general virology 88 (Pt 12), 3486, 2007 | 48 | 2007 |
| CGAT-core: A python framework for building scalable, reproducible computational biology workflows AP Cribbs, S Luna-Valero, C George, IM Sudbery, AJ Berlanga-Taylor, ... F1000Research 8 (377), 377, 2019 | 31 | 2019 |
| 11β-hydroxysteroid dehydrogenase-1 deficiency alters the gut microbiome response to Western diet JS Johnson, MN Opiyo, M Thomson, K Gharbi, JR Seckl, A Heger, ... The Journal of endocrinology 232 (2), 273, 2016 | 19 | 2016 |
| The nutritional basis of seasonal selective feeding by a marine herbivorous fish JS Johnson, KD Clements, D Raubenheimer Marine Biology 164 (10), 201, 2017 | 18 | 2017 |
| Longitudinal Analysis of Serum Cytokine Levels and Gut Microbial Abundance Links IL-17/IL-22 With Clostridia and Insulin Sensitivity in Humans X Zhou, JS Johnson, D Spakowicz, W Zhou, Y Zhou, E Sodergren, ... Diabetes 69 (8), 1833-1842, 2020 | 12 | 2020 |
| Molecular analysis shows that soil fungi from ancient semi-natural woodland exist in sites converted to non-native conifer plantations J Johnson, C Evans, N Brown, S Skeates, S Watkinson, D Bass Forestry: An International Journal of Forest Research 87 (5), 705-717, 2014 | 11 | 2014 |
| MSC: a metagenomic sequence classification algorithm S Saha, J Johnson, S Pal, GM Weinstock, S Rajasekaran Bioinformatics 35 (17), 2932-2940, 2019 | 9 | 2019 |
| Does temperature constrain diet choice in a marine herbivorous fish? JS Johnson, D Raubenheimer, SJ Bury, KD Clements Marine Biology 167 (99), 99, 2020 | 6 | 2020 |
| New statistical method identifies cytokines that distinguish stool microbiomes D Yang, J Johnson, X Zhou, E Deych, B Shands, B Hanson, E Sodergren, ... Scientific Reports 9 (1), 1-11, 2019 | 5 | 2019 |
| Effect of ingestion on the stable isotope signatures of marine herbivorous fish diets JS Johnson, D Raubenheimer, SJ Bury, KD Clements Journal of experimental marine biology and ecology 438, 137-143, 2012 | 5 | 2012 |
| The nutritional ecology of the New Zealand butterfish Odax pullus J Johnson PhD Thesis-University of Auckland, 2011 | 3 | 2011 |
| SVants–A long-read based method for structural variation detection in bacterial genomes BM Hanson, JS Johnson, SR Leopold, E Sodergren, GM Weinstock bioRxiv, 822312, 2019 | 2 | 2019 |
| The nutritional basis of seasonal selective feeding by a marine herbivorous fish D Raubenheimer, K Clements, J Johnson Springer, 2017 | | 2017 |
| Long non-coding RNAs in B cell development and activation A Heger, CP Ponting, J Johnson, TF Brazão, J Müller, VLJ Tybulewicz Blood 128 (7), 2016 | | 2016 |
