Support vector clustering A Ben-Hur, D Horn, HT Siegelmann, V Vapnik Journal of machine learning research 2 (Dec), 125-137, 2001 | 2133 | 2001 |
A user’s guide to support vector machines A Ben-Hur, J Weston Data mining techniques for the life sciences, 223-239, 2010 | 1282 | 2010 |
A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013 | 1072 | 2013 |
Protein interface prediction using graph convolutional networks AM Fout, J Byrd, B Shariat, A Ben-Hur Advances in Neural Information Processing Systems (NIPS), 2017 | 956 | 2017 |
Result analysis of the nips 2003 feature selection challenge I Guyon, S Gunn, A Ben-Hur, G Dror Advances in neural information processing systems 17, 2004 | 852 | 2004 |
A stability based method for discovering structure in clustered data A Ben-Hur, A Elisseeff, I Guyon Pacific Symposium on Biocomputing 2002, 6-17, 2001 | 839 | 2001 |
Support vector machines and kernels for computational biology A Ben-Hur, CS Ong, S Sonnenburg, B Schölkopf, G Rätsch PLoS computational biology 4 (10), e1000173, 2008 | 822 | 2008 |
Kernel methods for predicting protein–protein interactions A Ben-Hur, WS Noble Bioinformatics 21 (suppl_1), i38-i46, 2005 | 804 | 2005 |
A survey of the sorghum transcriptome using single-molecule long reads SE Abdel-Ghany, M Hamilton, JL Jacobi, P Ngam, N Devitt, F Schilkey, ... Nature communications 7 (1), 11706, 2016 | 501 | 2016 |
An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17, 1-19, 2016 | 418 | 2016 |
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20, 1-23, 2019 | 372 | 2019 |
Genotypic predictors of human immunodeficiency virus type 1 drug resistance SY Rhee, J Taylor, G Wadhera, A Ben-Hur, DL Brutlag, RW Shafer Proceedings of the National Academy of Sciences 103 (46), 17355-17360, 2006 | 342 | 2006 |
Large-scale identification of yeast integral membrane protein interactions JP Miller, RS Lo, A Ben-Hur, C Desmarais, I Stagljar, WS Noble, S Fields Proceedings of the National Academy of Sciences 102 (34), 12123-12128, 2005 | 331 | 2005 |
Detecting stable clusters using principal component analysis A Ben-Hur, I Guyon Functional Genomics: Methods and Protocols, 159-182, 2003 | 310 | 2003 |
RAMClust: a novel feature clustering method enables spectral-matching-based annotation for metabolomics data CD Broeckling, FA Afsar, S Neumann, A Ben-Hur, JE Prenni Analytical chemistry 86 (14), 6812-6817, 2014 | 300 | 2014 |
Choosing negative examples for the prediction of protein-protein interactions A Ben-Hur, WS Noble BMC bioinformatics 7 (Suppl 1), S2, 2006 | 282 | 2006 |
Remote homology detection: a motif based approach A Ben-Hur, D Brutlag Bioinformatics 19 (suppl_1), i26-i33, 2003 | 247 | 2003 |
A support vector clustering method A Ben-Hur, D Horn, HT Siegelmann, V Vapnik Proceedings 15th International Conference on Pattern Recognition. ICPR-2000 …, 2000 | 180 | 2000 |
Universality in sandpile models A Ben-Hur, O Biham Physical Review E 53 (2), R1317, 1996 | 180 | 1996 |
SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data MF Rogers, J Thomas, ASN Reddy, A Ben-Hur Genome biology 13, 1-17, 2012 | 166 | 2012 |