An atlas of healthy and injured cell states and niches in the human kidney BB Lake, R Menon, S Winfree, Q Hu, R Melo Ferreira, K Kalhor, ... Nature 619 (7970), 585-594, 2023 | 242 | 2023 |
Tools for the analysis of high-dimensional single-cell RNA sequencing data Y Wu, K Zhang Nature Reviews Nephrology 16 (7), 408-421, 2020 | 97 | 2020 |
Visualizing and interpreting single-cell gene expression datasets with similarity weighted nonnegative embedding Y Wu, P Tamayo, K Zhang Cell systems 7 (6), 656-666. e4, 2018 | 66 | 2018 |
Mapping cellular reprogramming via pooled overexpression screens with paired fitness and single-cell RNA-sequencing readout U Parekh, Y Wu, D Zhao, A Worlikar, N Shah, K Zhang, P Mali Cell systems 7 (5), 548-555. e8, 2018 | 45 | 2018 |
Defining the teratoma as a model for multi-lineage human development D McDonald, Y Wu, A Dailamy, J Tat, U Parekh, D Zhao, M Hu, A Tipps, ... Cell 183 (5), 1402-1419. e18, 2020 | 44 | 2020 |
A single-cell regulatory map of postnatal lung alveologenesis in humans and mice TE Duong, Y Wu, BC Sos, W Dong, S Limaye, LH Rivier, G Myers, ... Cell genomics 2 (3), 2022 | 18 | 2022 |
Coarse-grained descriptions of dynamics for networks with both intrinsic and structural heterogeneities T Bertalan, Y Wu, C Laing, CW Gear, IG Kevrekidis Frontiers in computational neuroscience 11, 43, 2017 | 12 | 2017 |
Cellular recruitment by podocyte-derived pro-migratory factors in assembly of the human renal filter AD Kim, BB Lake, S Chen, Y Wu, J Guo, RK Parvez, T Tran, ME Thornton, ... IScience 20, 402-414, 2019 | 10 | 2019 |
Charting oncogenicity of genes and variants across lineages via multiplexed screens in teratomas U Parekh, D McDonald, A Dailamy, Y Wu, T Cordes, K Zhang, A Tipps, ... Iscience 24 (10), 2021 | 3 | 2021 |
PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Y Wu, E Wershof, SM Schmon, M Nassar, B Osiński, R Eksi, K Zhang, ... arXiv preprint arXiv:2408.10609, 2024 | | 2024 |
Efficient genetic screening method K Zhang, P Mali, Y Wu, D Zhao US Patent 11,913,017, 2024 | | 2024 |
Methods for screening genetic perturbations P Mali, U Parekh, Y Wu, K Zhang US Patent 11,912,986, 2024 | | 2024 |
Revealing the transcription factor regulatory context of human specific cortical development using single-cell multi-omics Y Wu, B Lake, B Sos, S Chen, TE Duong, YC Yung, W Dong, S Limaye, ... bioRxiv, 2021.03. 19.436193, 2021 | | 2021 |
Novel method to engineer translantable human tissues K Zhang, Y Wu, A Dailamy, M Prashant, D Mcdonald, U Parekh, M Hu | | 2020 |
Studying human development by single-cell profiling of primary human tissues and genetic perturbations of novel developmental models Y Wu University of California, San Diego, 2020 | | 2020 |