Efficient search, mapping, and optimization of multi-protein genetic systems in diverse bacteria I Farasat, M Kushwaha, J Collens, M Easterbrook, M Guido, HM Salis Molecular Systems Biology 10, 2014 | 283 | 2014 |
A portable expression resource for engineering cross-species genetic circuits and pathways M Kushwaha, HM Salis Nature Communications 6, 2015 | 131 | 2015 |
Quantification of bacterial fluorescence using independent calibrants J Beal, T Haddock-Angelli, G Baldwin, M Gershater, A Dwijayanti, ... PLoS one 13 (6), e0199432, 2018 | 73 | 2018 |
Metabolic perceptrons for neural computing in biological systems A Pandi, M Koch, PL Voyvodic, P Soudier, J Bonnet, M Kushwaha, ... Nature communications 10 (1), 3880, 2019 | 69 | 2019 |
Using RNA as molecular code for programming cellular function M Kushwaha, W Rostain, S Prakash, JN Duncan, A Jaramillo ACS synthetic biology 5 (8), 795-809, 2016 | 60 | 2016 |
TbISWI regulates multiple polymerase I (Pol I)-transcribed loci and is present at Pol II transcription boundaries in Trypanosoma brucei TM Stanne*, M Kushwaha*, M Wand, JE Taylor, G Rudenko Eukaryotic cell 10 (7), 964-976, 2011 | 49 | 2011 |
NLP is a novel transcription regulator involved in VSG expression site control in Trypanosoma brucei MS Narayanan, M Kushwaha, K Ersfeld, A Fullbrook, TM Stanne, ... Nucleic acids research 39 (6), 2018-2031, 2011 | 45 | 2011 |
Identification of the ISWI chromatin remodeling complex of the early branching eukaryote Trypanosoma brucei T Stanne, MS Narayanan, S Ridewood, A Ling, K Witmer, M Kushwaha, ... Journal of Biological Chemistry 290 (45), 26954-26967, 2015 | 33 | 2015 |
Cell-free biosynthesis combined with deep learning accelerates de novo-development of antimicrobial peptides A Pandi, D Adam, A Zare, VT Trinh, SL Schaefer, M Burt, B Klabunde, ... Nature Communications 14 (1), 7197, 2023 | 23 | 2023 |
Dynamic colocalization of 2 simultaneously active VSG expression sites within a single expression-site body in Trypanosoma brucei J Budzak, LE Kerry, A Aristodemou, BS Hall, K Witmer, M Kushwaha, ... Proceedings of the National Academy of Sciences of the United States of America, 2019 | 18 | 2019 |
Differentially optimized cell-free buffer enables robust expression from unprotected linear DNA in exonuclease-deficient extracts AC Batista, A Levrier, P Soudier, PL Voyvodic, T Achmedov, ... ACS Synthetic Biology 11 (2), 732-746, 2022 | 17 | 2022 |
Engineered RNA-Interacting CRISPR Guide RNAs for Genetic Sensing and Diagnostics R Galizi, JN Duncan, W Rostain, CM Quinn, M Storch, M Kushwaha, ... The CRISPR Journal 3 (5), 398-408, 2020 | 16 | 2020 |
The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering J Herisson, T Duigou, M du Lac, K Bazi-Kabbaj, M Sabeti Azad, G Buldum, ... Nature Communications 13 (1), 5082, 2022 | 15 | 2022 |
Optimising protein synthesis in cell‐free systems, a review AC Batista, P Soudier, M Kushwaha, JL Faulon Engineering Biology 5 (1), 10-19, 2021 | 14 | 2021 |
Comparative analysis of three studies measuring fluorescence from engineered bacterial genetic constructs J Beal, GS Baldwin, NG Farny, M Gershater, T Haddock-Angelli, ... Plos one 16 (6), e0252263, 2021 | 11 | 2021 |
Distributed computation with continual population growth DJ Cho, M Függer, C Hopper, M Kushwaha, T Nowak, Q Soubeyran Distributed Computing, 1-23, 2021 | 6 | 2021 |
Digital Circuit Design for Biological and Silicon Computers M Függer, M Kushwaha, T Nowak Advances in Synthetic Biology, 153-171, 2020 | 5 | 2020 |
Functionalization of an antisense small RNA G Rodrigo, S Prakash, T Cordero, M Kushwaha, A Jaramillo Journal of molecular biology 428 (5), 889-892, 2016 | 5 | 2016 |
PeroxiHUB: A Modular Cell-Free Biosensing Platform Using H2O2 as Signal Integrator P Soudier, A Zúñiga, T Duigou, PL Voyvodic, K Bazi-Kabbaj, M Kushwaha, ... ACS Synthetic Biology 11 (8), 2578-2588, 2022 | 4 | 2022 |
Toehold switch based biosensors for sensing the highly trafficked rosewood Dalbergia maritima P Soudier, DR Pinzon, T Reif-Trauttmansdorff, H Hijazi, M Cherrière, ... Synthetic and Systems Biotechnology 7 (2), 791-801, 2022 | 3 | 2022 |