Boolean models can explain bistability in the lac operon A Veliz-Cuba, B Stigler Journal of Computational Biology 18 (6), 783-794, 2011 | 224 | 2011 |
Reduction of Boolean network models A Veliz-Cuba Journal of theoretical biology, 2011 | 130 | 2011 |
The neural ring: an algebraic tool for analyzing the intrinsic structure of neural codes C Curto, V Itskov, A Veliz-Cuba, N Youngs Bulletin of mathematical biology 75, 1571-1611, 2013 | 118 | 2013 |
Polynomial algebra of discrete models in systems biology A Veliz-Cuba, AS Jarrah, R Laubenbacher Bioinformatics 26 (13), 1637-1643, 2010 | 115 | 2010 |
ADAM: Analysis of discrete models of biological systems using computer algebra F Hinkelmann, M Brandon, B Guang, R McNeill, G Blekherman, ... BMC bioinformatics 12 (1), 295, 2011 | 90 | 2011 |
Modeling Stochasticity and Variability in Gene Regulatory Networks D Murrugarra, A Veliz-Cuba, B Aguilar, S Arat, R Laubenbacher EURASIP Journal on Bioinformatics and Systems Biology, 2012 | 86 | 2012 |
The dynamics of conjunctive and disjunctive Boolean network models AS Jarrah, R Laubenbacher, A Veliz-Cuba Bulletin of mathematical biology 72 (6), 1425-1447, 2010 | 83 | 2010 |
Steady state analysis of Boolean molecular network models via model reduction and computational algebra A Veliz-Cuba, B Aguilar, F Hinkelmann, R Laubenbacher BMC bioinformatics 15, 1-8, 2014 | 81 | 2014 |
Identification of control targets in Boolean molecular network models via computational algebra D Murrugarra, A Veliz-Cuba, B Aguilar, R Laubenbacher BMC systems biology 10, 1-11, 2016 | 77 | 2016 |
The effect of negative feedback loops on the dynamics of Boolean networks E Sontag, A Veliz-Cuba, R Laubenbacher, AS Jarrah Biophysical Journal 95 (2), 518-526, 2008 | 72 | 2008 |
Stochastic models of evidence accumulation in changing environments A Veliz-Cuba, ZP Kilpatrick, K Josic siam REVIEW 58 (2), 264-289, 2016 | 50 | 2016 |
An algebraic approach to reverse engineering finite dynamical systems arising from biology A Veliz-Cuba SIAM Journal on Applied Dynamical Systems 11 (1), 31-48, 2012 | 38 | 2012 |
Evolution of cellular differentiation: from hypotheses to models P Márquez-Zacarías, RM Pineau, M Gomez, A Veliz-Cuba, D Murrugarra, ... Trends in Ecology & Evolution 36 (1), 49-60, 2021 | 35 | 2021 |
On the computation of fixed points in Boolean networks A Veliz-Cuba, R Laubenbacher Journal of Applied Mathematics and Computing 39, 145-153, 2012 | 34 | 2012 |
Evidence accumulation and change rate inference in dynamic environments AE Radillo, A Veliz-Cuba, K Josić, ZP Kilpatrick Neural computation 29 (6), 1561-1610, 2017 | 32 | 2017 |
Bistability and oscillations in co‐repressive synthetic microbial consortia M Sadeghpour, A Veliz‐Cuba, G Orosz, K Josić, MR Bennett Quantitative Biology 5 (1), 55-66, 2017 | 31 | 2017 |
Networks that learn the precise timing of event sequences A Veliz-Cuba, H Shouval, K Josic, ZP Kilpatrick Journal of Computational Neuroscience 39 (3), 235-254, 2015 | 31 | 2015 |
Sources of variability in a synthetic gene oscillator A Veliz-Cuba, AJ Hirning, AA Atanas, F Hussain, F Vancia, K Josić, ... PLoS computational biology 11 (12), e1004674, 2015 | 22 | 2015 |
On the relationship of steady states of continuous and discrete models arising from biology A Veliz-Cuba, J Arthur, L Hochstetler, V Klomps, E Korpi Bulletin of mathematical biology 74, 2779-2792, 2012 | 21 | 2012 |
Dimension reduction of large sparse AND-NOT network models A Veliz-Cuba, B Aguilar, R Laubenbacher Electronic Notes in Theoretical Computer Science 316, 83-95, 2015 | 20 | 2015 |