| XTMS: pathway design in an eXTended metabolic space P Carbonell, P Parutto, J Herisson, SB Pandit, JL Faulon Nucleic acids research 42 (W1), W389-W394, 2014 | 121 | 2014 |
| Genomic organization of evolutionarily correlated genes in bacteria: limits and strategies I Junier, J Hérisson, F Képès Journal of molecular biology 419 (5), 369-386, 2012 | 40 | 2012 |
| Periodic pattern detection in sparse boolean sequences I Junier, J Hérisson, F Képès Algorithms for Molecular Biology 5, 1-11, 2010 | 31 | 2010 |
| A 3D pattern matching algorithm for DNA sequences J Hérisson, G Payen, R Gherbi Bioinformatics 23 (6), 680-686, 2007 | 23 | 2007 |
| Visual data mining of genomic databases by immersive graph-based exploration N Férey, PE Gros, J Hérisson, R Gherbi Proceedings of the 3rd international conference on Computer graphics and …, 2005 | 23 | 2005 |
| The bacterial Tn9 chloramphenicol resistance gene: an attractive DNA segment for Mos1 mariner insertions G Crénès, D Ivo, J Hérisson, S Dion, S Renault, Y Bigot, A Petit Molecular Genetics and Genomics 281, 315-328, 2009 | 22 | 2009 |
| DNA in Virtuo visualization and exploration of 3D genomic structures J Hérisson, PE Gros, N Férey, O Magneau, R Gherbi Proceedings of the 3rd international conference on Computer graphics …, 2004 | 19 | 2004 |
| Representation and processing of complex DNA spatial architecture and its annotated genomic content R Gherbi, J Herisson Biocomputing 2002, 151-162, 2001 | 17 | 2001 |
| The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering J Hérisson, T Duigou, M Du Lac, K Bazi-Kabbaj, M Sabeti Azad, ... Nature Communications 13 (1), 5082, 2022 | 15 | 2022 |
| Model-based prediction of the 3D trajectory of huge DNA sequences interactive visualization and exploration J Hérisson, R Gherbi Proceedings 2nd Annual IEEE International Symposium on Bioinformatics and …, 2001 | 15 | 2001 |
| A new approach to design an interactive system for molecular analysis M Essabbah, S Otmane, J Hérisson, M Mallem Human-Computer Interaction. Interacting in Various Application Domains: 13th …, 2009 | 11 | 2009 |
| ADN-Viewer: a 3D approach for bioinformatic analyses of large DNA sequences. J Hérisson, N Ferey, PE Gros, R Gherbi Cellular and Molecular Biology (Noisy-le-Grand, France) 52 (6), 24-31, 2007 | 10 | 2007 |
| GenoMEDIA: a middleware platform for distributed genomic information PE Gros, N Férey, J Hérisson, R Gherbi Proceedings. 2004 International Conference on Information and Communication …, 2004 | 10 | 2004 |
| ADN_Viewer: A Software Framework For 3D Modeling and Stereoscopic Visualization of the Genome R Gherbi, J Hérisson Computer Graphics & Geometry 3 (1), 1-19, 2001 | 9 | 2001 |
| A distributed multimedia database visualization within an immersive environment for bioinformatics N Férey, PE Gros, J Hérisson, R Gherbi IEEE Sixth International Symposium on Multimedia Software Engineering, 156-159, 2004 | 7 | 2004 |
| 3D visualization and virtual exploration of genomic sequences J Hérisson, N Férey, G PE, O Magneau, R Gherbi Data Science Journal 4, 82-91, 2005 | 6 | 2005 |
| Yeast naked DNA spatial organization predisposes to transcriptional regulation O Matte-Tailliez, J Hérisson, N Ferey, O Magneau, PE Gros, F Képès, ... International Conference on Computational Science and its Applications, 222-231, 2006 | 5 | 2006 |
| Exploration by visualization of numerical and textual genomic data N Férey, PE Gros, J Hérisson, R Gherbi Journal of Biological Physics and Chemistry 4, 102-110, 2004 | 5 | 2004 |
| Galaxy-SynBioCAD: Automated Pipeline for Synthetic Biology Design and Engineering J Hérisson, T Duigou, M Du Lac, K Bazi-Kabbaj, MS Azad, G Buldum, ... bioRxiv, 2022.02. 23.481618, 2022 | 4 | 2022 |
| Boosting binding sites prediction using gene’s positions M Elati, R Fekih, R Nicolle, I Junier, J Hérisson, F Képès Algorithms in Bioinformatics: 11th International Workshop, WABI 2011 …, 2011 | 4 | 2011 |
