The challenge of intracellular antibiotic accumulation, a function of fluoroquinolone influx versus bacterial efflux J Vergalli, A Atzori, J Pajovic, E Dumont, G Malloci, M Masi, AV Vargiu, ... Communications Biology 3 (1), 198, 2020 | 42 | 2020 |
Computer simulations of the activity of RND efflux pumps AV Vargiu, VK Ramaswamy, G Malloci, I Malvacio, A Atzori, P Ruggerone Research in microbiology 169 (7-8), 384-392, 2018 | 40 | 2018 |
Predictive rules of efflux inhibition and avoidance in Pseudomonas aeruginosa J Mehla, G Malloci, R Mansbach, CA López, R Tsivkovski, K Haynes, ... MBio 12 (1), 10.1128/mbio. 02785-20, 2021 | 29 | 2021 |
Identification and characterization of carbapenem binding sites within the RND-transporter AcrB A Atzori, VN Malviya, G Malloci, J Dreier, KM Pos, AV Vargiu, ... Biochimica et Biophysica Acta (BBA)-Biomembranes 1861 (1), 62-74, 2019 | 28 | 2019 |
Molecular interactions of cephalosporins with the deep binding pocket of the RND transporter AcrB A Atzori, G Malloci, JD Prajapati, A Basciu, A Bosin, U Kleinekathöfer, ... The Journal of Physical Chemistry B 123 (22), 4625-4635, 2019 | 20 | 2019 |
Base sequence specificity of counterion binding to DNA: what can MD simulations tell us? A Atzori, S Liggi, A Laaksonen, M Porcu, AP Lyubartsev, G Saba, F Mocci Canadian Journal of Chemistry 94 (12), 1181-1188, 2016 | 18 | 2016 |
Discovery of Highly Selective Inhibitors of Calmodulin-Dependent Kinases That Restore Insulin Sensitivity in the Diet-Induced Obesity in Vivo Mouse Model C Fromont, A Atzori, D Kaur, L Hashmi, G Greco, A Cabanillas, ... Journal of medicinal chemistry 63 (13), 6784-6801, 2020 | 17 | 2020 |
Effect of sequence and stereochemistry reversal on p53 peptide mimicry A Atzori, AE Baker, M Chiu, RA Bryce, P Bonnet PLoS One 8 (7), e68723, 2013 | 16 | 2013 |
Exploring protein kinase conformation using swarm-enhanced sampling molecular dynamics A Atzori, NJ Bruce, KK Burusco, B Wroblowski, P Bonnet, RA Bryce Journal of chemical information and modeling 54 (10), 2764-2775, 2014 | 15 | 2014 |
Molecular Interactions of Carbapenem Antibiotics with the Multidrug Efflux Transporter AcrB of Escherichia coli A Atzori, G Malloci, F Cardamone, A Bosin, AV Vargiu, P Ruggerone International journal of molecular sciences 21 (3), 860, 2020 | 14 | 2020 |
Conformational analysis of peptides and proteins for drug design using molecular simulations A Atzori PQDT-UK & Ireland, 2015 | 1 | 2015 |
Molecular Dynamics Investigations on Base Sequence Specificity of Counterion Binding to DNA A Atzori, S Liggi, A Laaksonen, A Lyubartsev, G Saba, M Porcu, F Mocci Biophysical Journal 102 (3), 637a, 2012 | 1 | 2012 |
Characterization and identification of Ampicillin and Amoxicillin binding sites within the multidrug transporter MexB of P. Aeruginosa F CARDAMONE, A ATZORI, A BOSIN, G SERRA, A Vittorio EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 48, S198-S198, 2019 | | 2019 |
Molecular dynamics of R-spondin 1: Conformation and druggability analysis R Chikhale, K Burusco-Goni, A Atzori, R Bryce ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 256, 2018 | | 2018 |
Computational Study of the Interaction between Antimicrobial Compounds and Efflux Systems of Gram-Negative Bacteria A Atzori, AV Vargiu, G Malloci, P Ruggerone Biophysical Journal 112 (3), 274a, 2017 | | 2017 |
Affinity sites in E. coli transporters: structural and dynamical features AV Vargiu, A Atzori, VR Krishnan, G Malloci, P Ruggerone | | |
Binding of antibiotics to the multi-drug efflux transporter AcrB of E. coli investigated by molecular modeling G Malloci, VK Ramaswamy, A Atzori, G Serra, A Bosin, AV Vargiu, ... | | |
Water and ion parameters effects on the base sequence specificity of ion binding to DNA in MD simulations A Atzori, M Porcu, S Liggi, A Laaksonen, A Lyubartsev, G Saba INTERMOLECULAR INTERACTIONS IN CRYSTALS: VIA EXPERIMENT AND THEORY TO …, 0 | | |
Exploring protein kinase conformation using swarm-enhanced sampling molec-ular dynamics (sesMD) A Atzori, NJ Bruce, KK Burusco, B Wroblowski, P Bonnet, RA Bryce | | |
Wednesday, February 29, 2012 637a A Atzori, S Liggi, A Laaksonen, A Lyubartsev, G Saba, M Porcu, F Mocci | | |