Extending the limits of quantitative proteome profiling with data-independent acquisition and application to acetaminophen-treated three-dimensional liver microtissues*[S] R Bruderer, OM Bernhardt, T Gandhi, SM Miladinović, LY Cheng, ... Molecular & Cellular Proteomics 14 (5), 1400-1410, 2015 | 969 | 2015 |
An immune atlas of clear cell renal cell carcinoma S Chevrier, JH Levine, VRT Zanotelli, K Silina, D Schulz, M Bacac, ... Cell 169 (4), 736-749. e18, 2017 | 903 | 2017 |
The single-cell pathology landscape of breast cancer HW Jackson, JR Fischer, VRT Zanotelli, HR Ali, R Mechera, SD Soysal, ... Nature 578 (7796), 615-620, 2020 | 670 | 2020 |
histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data D Schapiro, HW Jackson, S Raghuraman, JR Fischer, VRT Zanotelli, ... Nature methods 14 (9), 873-876, 2017 | 515 | 2017 |
Compensation of signal spillover in suspension and imaging mass cytometry S Chevrier, HL Crowell, VRT Zanotelli, S Engler, MD Robinson, ... Cell systems 6 (5), 612-620. e5, 2018 | 316 | 2018 |
Systems-level analysis of mechanisms regulating yeast metabolic flux SR Hackett, VRT Zanotelli, W Xu, J Goya, JO Park, DH Perlman, ... Science 354 (6311), aaf2786, 2016 | 287 | 2016 |
Simultaneous multiplexed imaging of mRNA and proteins with subcellular resolution in breast cancer tissue samples by mass cytometry D Schulz, VRT Zanotelli, JR Fischer, D Schapiro, S Engler, XK Lun, ... Cell systems 6 (1), 25-36. e5, 2018 | 275 | 2018 |
Imaging mass cytometry and multiplatform genomics define the phenogenomic landscape of breast cancer HR Ali, HW Jackson, VRT Zanotelli, E Danenberg, JR Fischer, H Bardwell, ... Nature Cancer 1 (2), 163-175, 2020 | 242 | 2020 |
A map of human type 1 diabetes progression by imaging mass cytometry N Damond, S Engler, VRT Zanotelli, D Schapiro, CH Wasserfall, ... Cell metabolism 29 (3), 755-768. e5, 2019 | 239 | 2019 |
In-depth characterization of monocyte-derived macrophages using a mass cytometry-based phagocytosis assay D Schulz, Y Severin, VRT Zanotelli, B Bodenmiller Scientific reports 9 (1), 1925, 2019 | 164 | 2019 |
Breast tumor microenvironment structures are associated with genomic features and clinical outcome E Danenberg, H Bardwell, VRT Zanotelli, E Provenzano, SF Chin, ... Nature genetics 54 (5), 660-669, 2022 | 129 | 2022 |
An end-to-end workflow for multiplexed image processing and analysis J Windhager, VRT Zanotelli, D Schulz, L Meyer, M Daniel, B Bodenmiller, ... Nature Protocols 18 (11), 3565-3613, 2023 | 72 | 2023 |
Long‐term exposure to bis(2‐ethylhexyl)phthalate (DEHP) inhibits growth of guppy fish (Poecilia reticulata) VRT Zanotelli, SCF Neuhauss, MU Ehrengruber Journal of Applied Toxicology: An International Journal 30 (1), 29-33, 2010 | 64 | 2010 |
CATALYST: cytometry dATa anALYSis tools HL Crowell, VRT Zanotelli, S Chevrier, MD Robinson, B Bodenmiller Bioconductor version: Release (3.11) 10, B9, 2020 | 57 | 2020 |
Influence of node abundance on signaling network state and dynamics analyzed by mass cytometry XK Lun, VRT Zanotelli, JD Wade, D Schapiro, M Tognetti, N Dobberstein, ... Nature biotechnology 35 (2), 164-172, 2017 | 48 | 2017 |
Analysis of the human kinome and phosphatome by mass cytometry reveals overexpression-induced effects on cancer-related signaling XK Lun, D Szklarczyk, A Gábor, N Dobberstein, VRT Zanotelli, ... Molecular cell 74 (5), 1086-1102. e5, 2019 | 37 | 2019 |
A quantitative analysis of the interplay of environment, neighborhood, and cell state in 3D spheroids VRT Zanotelli, M Leutenegger, XK Lun, F Georgi, N de Souza, ... Molecular Systems Biology 16 (12), e9798, 2020 | 20 | 2020 |
A flexible image segmentation pipeline for heterogeneous multiplexed tissue images based on pixel classification VRT Zanotelli, B Bodenmiller | 5 | 2019 |
Abstract P3-07-11: Withdrawn HW Jackson, JR Fischer, VR Zanotelli, SD Soysal, M Simone, WP Weber, ... Cancer Research 79 (4_Supplement), P3-07-11-P3-07-11, 2019 | | 2019 |
Investigation of intra-and intercellular signaling through mass cytometry based single cell methods VRT Zanotelli University of Zurich, 2019 | | 2019 |