Tools for experimental and computational analyses of off-target editing by programmable nucleases XR Bao, Y Pan, CM Lee, TH Davis, G Bao Nature protocols 16 (1), 10-26, 2021 | 88 | 2021 |
Comprehensive analysis and accurate quantification of unintended large gene modifications induced by CRISPR-Cas9 gene editing SH Park, M Cao, Y Pan, TH Davis, L Saxena, H Deshmukh, Y Fu, ... Science Advances 8 (42), eabo7676, 2022 | 47 | 2022 |
The TRACE-Seq method tracks recombination alleles and identifies clonal reconstitution dynamics of gene targeted human hematopoietic stem cells R Sharma, DP Dever, CM Lee, A Azizi, Y Pan, J Camarena, T Köhnke, ... Nature communications 12 (1), 472, 2021 | 25 | 2021 |
Single-cell analysis identifies NOTCH3-mediated interactions between stromal cells that promote microenvironment remodeling and invasion in lung adenocarcinoma H Xiang, Y Pan, MA Sze, M Wlodarska, L Li, KA Van De Mark, H Qamar, ... Cancer Research 84 (9), 1410-1425, 2024 | 12 | 2024 |
Virtual pharmacist: a platform for pharmacogenomics R Cheng, RKK Leung, Y Chen, Y Pan, Y Tong, Z Li, L Ning, XB Ling, J He PLoS One 10 (10), e0141105, 2015 | 12 | 2015 |
Fine-mapping within eQTL credible intervals by expression CROP-seq Y Pan, R Tian, C Lee, G Bao, G Gibson Biology Methods and Protocols 5 (1), bpaa008, 2020 | 10 | 2020 |
Pitfalls in single clone CRISPR-Cas9 mutagenesis to fine-map regulatory intervals R Tian, Y Pan, THA Etheridge, H Deshmukh, D Gulick, G Gibson, G Bao, ... Genes 11 (5), 504, 2020 | 8 | 2020 |
Prediction of influenza B vaccine effectiveness from sequence data Y Pan, MW Deem Vaccine 34 (38), 4610-4617, 2016 | 8 | 2016 |
TRACE-Seq reveals clonal reconstitution dynamics of gene targeted human hematopoietic stem cells R Sharma, DP Dever, CM Lee, A Azizi, Y Pan, J Camarena, T Köhnke, ... BioRxiv, 2020.05. 25.115329, 2020 | 3 | 2020 |
The need for transfer learning in CRISPR-cas off-target scoring PK Kota, Y Pan, HA Vu, M Cao, RG Baraniuk, G Bao bioRxiv, 2021.08. 28.457846, 2021 | 2 | 2021 |
Experimental and Computational Analyses of Off-target Editing by Programmable Nucleases XR Bao, Y Pan, CM Lee, TH Davis, G Bao | | 2020 |
In-Silico and Experimental Detection of Personalized CRISPR Off-Targets Y Pan, C Lee, H Deshmukh, G Bao MOLECULAR THERAPY 28 (4), 456-457, 2020 | | 2020 |
Profiling Genome Editing Outcomes for Biological Studies and Disease Treatment Y Pan Rice University, 2020 | | 2020 |
Barcoded Clonal Tracking of CRISPR-Cas9 and rAAV6-Mediated Gene Targeting in Human Hematopoietic Stem and Progenitor Cells DP Dever, R Sharma, CM Lee, A Aziz, T Koehnke, J Camarena, Y Pan, ... MOLECULAR THERAPY 27 (4), 5-5, 2019 | | 2019 |