Resistance Mutations in gyrA and parC are Common in Escherichia Communities of both Fluoroquinolone-Polluted and Uncontaminated Aquatic Environments A Johnning, E Kristiansson, J Fick, B Weijdegård, DGJ Larsson Frontiers in microbiology 6, 1355, 2015 | 90 | 2015 |
Acquired genetic mechanisms of a multiresistant bacterium isolated from a treatment plant receiving wastewater from antibiotic production A Johnning, ERB Moore, L Svensson-Stadler, YS Shouche, DGJ Larsson, ... Applied and environmental microbiology 79 (23), 7256-7263, 2013 | 77 | 2013 |
Typing and characterization of bacteria using bottom-up tandem mass spectrometry proteomics F Boulund, R Karlsson, L Gonzales-Siles, A Johnning, N Karami, ... Molecular & Cellular Proteomics 16 (6), 1052-1063, 2017 | 69 | 2017 |
Isolation of novel IncA/C and IncN fluoroquinolone resistance plasmids from an antibiotic-polluted lake CF Flach, A Johnning, I Nilsson, K Smalla, E Kristiansson, DGJ Larsson Journal of Antimicrobial Chemotherapy 70 (10), 2709-2717, 2015 | 63 | 2015 |
Strategies to improve usability and preserve accuracy in biological sequence databases J Bengtsson‐Palme, F Boulund, R Edström, A Feizi, A Johnning, ... Proteomics 16 (18), 2454-2460, 2016 | 53 | 2016 |
A novel method to discover fluoroquinolone antibiotic resistance (qnr) genes in fragmented nucleotide sequences F Boulund, A Johnning, MB Pereira, DGJ Larsson, E Kristiansson BMC genomics 13, 1-9, 2012 | 43 | 2012 |
Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes JS Inda-Díaz, D Lund, M Parras-Moltó, A Johnning, J Bengtsson-Palme, ... Microbiome 11 (1), 44, 2023 | 35 | 2023 |
Comprehensive screening of genomic and metagenomic data reveals a large diversity of tetracycline resistance genes F Berglund, ME Böhm, A Martinsson, S Ebmeyer, T Österlund, A Johnning, ... Microbial genomics 6 (11), e000455, 2020 | 33 | 2020 |
The resistomes of six carbapenem-resistant pathogens–a critical genotype–phenotype analysis A Johnning, N Karami, E Tång Hallbäck, V Müller, L Nyberg, ... Microbial genomics 4 (11), e000233, 2018 | 28 | 2018 |
Discovery of species-unique peptide biomarkers of bacterial pathogens by tandem mass spectrometry-based proteotyping R Karlsson, A Thorsell, M Gomila, F Salvà-Serra, HE Jakobsson, ... Molecular & Cellular Proteomics 19 (3), 518-528, 2020 | 27 | 2020 |
Quinolone resistance mutations in the faecal microbiota of Swedish travellers to India A Johnning, E Kristiansson, M Angelin, N Marathe, YS Shouche, ... BMC microbiology 15, 1-8, 2015 | 22 | 2015 |
Cultivation-free typing of bacteria using optical DNA mapping V Müller, M Nyblom, A Johnning, M Wrande, A Dvirnas, S Kk, CG Giske, ... ACS infectious diseases 6 (5), 1076-1084, 2020 | 18 | 2020 |
An updated phylogeny of the metallo-β-lactamases F Berglund, A Johnning, DGJ Larsson, E Kristiansson Journal of Antimicrobial Chemotherapy 76 (1), 117-123, 2021 | 16 | 2021 |
Nonlinear mixed effects modeling of deterministic and stochastic dynamical systems in Wolfram Mathematica J Leander, J Almquist, A Johnning, J Larsson, M Jirstrand IFAC-PapersOnLine 54 (7), 409-414, 2021 | 13* | 2021 |
Large-scale characterization of the macrolide resistome reveals high diversity and several new pathogen-associated genes D Lund, N Kieffer, M Parras-Moltó, S Ebmeyer, F Berglund, A Johnning, ... Microbial Genomics 8 (1), 000770, 2022 | 7 | 2022 |
Combining dense and sparse labeling in optical DNA mapping E Torstensson, G Goyal, A Johnning, F Westerlund, T Ambjörnsson Plos one 16 (11), e0260489, 2021 | 6 | 2021 |
Strain-level bacterial typing directly from patient samples using optical DNA mapping M Nyblom, A Johnning, K Frykholm, M Wrande, V Müller, G Goyal, ... Communications Medicine 3 (1), 31, 2023 | 5 | 2023 |
Extensive screening reveals previously undiscovered aminoglycoside resistance genes in human pathogens D Lund, RD Coertze, M Parras-Moltó, F Berglund, CF Flach, A Johnning, ... Communications Biology 6 (1), 812, 2023 | 4 | 2023 |
Draft genome sequence of extended-spectrum-β-lactamase-producing Escherichia coli strain CCUG 62462, isolated from a urine sample A Johnning, HE Jakobsson, F Boulund, F Salvà-Serra, ERB Moore, ... Genome Announcements 4 (6), 10.1128/genomea. 01382-16, 2016 | 2 | 2016 |
Confidence-based Prediction of Antibiotic Resistance at the Patient-level Using Transformers JS Inda-Diaz, A Johnning, M Hessel, A Sjoberg, A Lokrantz, L Helldal, ... | 1 | 2023 |