baySeq: empirical Bayesian methods for identifying differential expression in sequence count data TJ Hardcastle, KA Kelly BMC Bioinformatics 11 (1), 422, 2010 | 1007 | 2010 |
Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells A Molnar, CW Melnyk, A Bassett, TJ Hardcastle, R Dunn, DC Baulcombe science 328 (5980), 872-875, 2010 | 833 | 2010 |
The Arabidopsis RNA-Directed DNA Methylation Argonautes Functionally Diverge Based on Their Expression and Interaction with Target Loci ER Havecker, LM Wallbridge, TJ Hardcastle, MS Bush, KA Kelly, ... The Plant Cell 22 (2), 321-334, 2010 | 458 | 2010 |
Arabidopsis meiotic crossover hot spots overlap with H2A.Z nucleosomes at gene promoters K Choi, X Zhao, KA Kelly, O Venn, JD Higgins, NE Yelina, TJ Hardcastle, ... Nature genetics 45 (11), 1327-1336, 2013 | 358 | 2013 |
Chromosomal instability determines taxane response C Swanton, B Nicke, M Schuett, AC Eklund, C Ng, Q Li, T Hardcastle, ... Proceedings of the National Academy of Sciences 106 (21), 8671-8676, 2009 | 311 | 2009 |
Mobile small RNAs regulate genome-wide DNA methylation MG Lewsey, TJ Hardcastle, CW Melnyk, A Molnar, A Valli, MA Urich, ... Proceedings of the National Academy of Sciences 113 (6), E801-E810, 2016 | 262 | 2016 |
Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions K Choi, X Zhao, AJ Tock, C Lambing, CJ Underwood, TJ Hardcastle, ... Genome research 28 (4), 532-546, 2018 | 203 | 2018 |
Genomic analysis of genetic heterogeneity and evolution in high-grade serous ovarian carcinoma SL Cooke, CKY Ng, N Melnyk, MJ Garcia, T Hardcastle, J Temple, ... Oncogene 29 (35), 4905-4913, 2010 | 193 | 2010 |
DNA methylation epigenetically silences crossover hot spots and controls chromosomal domains of meiotic recombination in Arabidopsis NE Yelina, C Lambing, TJ Hardcastle, X Zhao, B Santos, IR Henderson Genes & development 29 (20), 2183-2202, 2015 | 185 | 2015 |
Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration CW Melnyk, A Gabel, TJ Hardcastle, S Robinson, S Miyashima, I Grosse, ... Proceedings of the National Academy of Sciences 115 (10), E2447-E2456, 2018 | 157 | 2018 |
The use of duplex-specific nuclease in ribosome profiling and a user-friendly software package for Ribo-seq data analysis BY Chung, TJ Hardcastle, JD Jones, N Irigoyen, AE Firth, DC Baulcombe, ... Rna 21 (10), 1731-1745, 2015 | 126 | 2015 |
Analysis of small RNA in fission yeast; centromeric siRNAs are potentially generated through a structured RNA I Djupedal, IC Kos‐Braun, RA Mosher, N Söderholm, F Simmer, ... The EMBO journal 28 (24), 3832-3844, 2009 | 99 | 2009 |
Recombination rate heterogeneity within Arabidopsis disease resistance genes K Choi, C Reinhard, H Serra, PA Ziolkowski, CJ Underwood, X Zhao, ... PLoS Genetics 12 (7), e1006179, 2016 | 82 | 2016 |
A novel DCL2-dependent miRNA pathway in tomato affects susceptibility to RNA viruses Z Wang, TJ Hardcastle, AC Pastor, WH Yip, S Tang, DC Baulcombe Genes & development 32 (17-18), 1155-1160, 2018 | 76 | 2018 |
Getting a Full Dose? Reconsidering Sex Chromosome Dosage Compensation in the Silkworm, Bombyx mori JR Walters, TJ Hardcastle Genome Biology and Evolution 3, 491-504, 2011 | 70 | 2011 |
Sex chromosome dosage compensation in Heliconius butterflies: global yet still incomplete? JR Walters, TJ Hardcastle, CD Jiggins Genome biology and evolution 7 (9), 2545-2559, 2015 | 63 | 2015 |
Regulation of genome‐wide DNA methylation by mobile small RNAs M Tamiru, TJ Hardcastle, MG Lewsey New Phytologist 217 (2), 540-546, 2018 | 59 | 2018 |
Generalised empirical Bayesian methods for discovery of differential data in high-throughput biology TJ Hardcastle Bioinformatics, 2015 | 58* | 2015 |
Identifying small interfering RNA loci from high-throughput sequencing data TJ Hardcastle, KA Kelly, DC Baulcombe Bioinformatics 28 (4), 457-463, 2012 | 43 | 2012 |
Evaluating female remating rates in light of spermatophore degradation in Heliconius butterflies: pupal‐mating monandry versus adult‐mating polyandry JR Walters, C Corbin, TJ Hardcastle, CD Jiggins Ecological Entomology 37 (4), 257-268, 2012 | 38 | 2012 |