| A reference map of the human binary protein interactome K Luck, DK Kim, L Lambourne, K Spirohn, BE Begg, W Bian, R Brignall, ... Nature 580 (7803), 402-408, 2020 | 966 | 2020 |
| Widespread expansion of protein interaction capabilities by alternative splicing X Yang, J Coulombe-Huntington, S Kang, GM Sheynkman, T Hao, ... Cell 164 (4), 805-817, 2016 | 555 | 2016 |
| Proteome-scale human interactomics K Luck, GM Sheynkman, I Zhang, M Vidal Trends in biochemical sciences 42 (5), 342-354, 2017 | 158 | 2017 |
| Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq GM Sheynkman, MR Shortreed, BL Frey, LM Smith Molecular & Cellular Proteomics 12 (8), 2341-2353, 2013 | 147 | 2013 |
| Proteogenomics: integrating next-generation sequencing and mass spectrometry to characterize human proteomic variation GM Sheynkman, MR Shortreed, AJ Cesnik, LM Smith Annual review of analytical chemistry 9 (1), 521-545, 2016 | 116 | 2016 |
| Full-length mRNA sequencing uncovers a widespread coupling between transcription initiation and mRNA processing SY Anvar, G Allard, E Tseng, GM Sheynkman, E de Klerk, M Vermaat, ... Genome biology 19, 1-18, 2018 | 104 | 2018 |
| Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations GM Sheynkman, JE Johnson, PD Jagtap, MR Shortreed, G Onsongo, ... BMC genomics 15, 1-9, 2014 | 100 | 2014 |
| Full-length transcript sequencing of human and mouse cerebral cortex identifies widespread isoform diversity and alternative splicing SK Leung, AR Jeffries, I Castanho, BT Jordan, K Moore, JP Davies, ... Cell reports 37 (7), 2021 | 94 | 2021 |
| Large-scale mass spectrometric detection of variant peptides resulting from nonsynonymous nucleotide differences GM Sheynkman, MR Shortreed, BL Frey, M Scalf, LM Smith Journal of proteome research 13 (1), 228-240, 2014 | 94 | 2014 |
| Global identification of protein post-translational modifications in a single-pass database search MR Shortreed, CD Wenger, BL Frey, GM Sheynkman, M Scalf, MP Keller, ... Journal of proteome research 14 (11), 4714-4720, 2015 | 59 | 2015 |
| Alkylating tryptic peptides to enhance electrospray ionization mass spectrometry analysis SE Kulevich, BL Frey, G Kreitinger, LM Smith Analytical chemistry 82 (24), 10135-10142, 2010 | 50 | 2010 |
| Metabolism of a highly selective gelatinase inhibitor generates active metabolite M Lee, A Villegas‐Estrada, G Celenza, B Boggess, M Toth, G Kreitinger, ... Chemical Biology & Drug Design 70 (5), 371-382, 2007 | 47 | 2007 |
| Sequence-specific capture of protein-DNA complexes for mass spectrometric protein identification CH Wu, S Chen, MR Shortreed, GM Kreitinger, Y Yuan, BL Frey, Y Zhang, ... PloS one 6 (10), e26217, 2011 | 46 | 2011 |
| Enhanced protein isoform characterization through long-read proteogenomics RM Miller, BT Jordan, MM Mehlferber, ED Jeffery, C Chatzipantsiou, ... Genome biology 23 (1), 69, 2022 | 43 | 2022 |
| Absolute quantification of prion protein (90–231) using stable isotope-labeled chymotryptic peptide standards in a LC-MRM AQUA workflow R Sturm, G Sheynkman, C Booth, LM Smith, JA Pedersen, L Li Journal of the American Society for Mass Spectrometry 23 (9), 1522-1533, 2012 | 39 | 2012 |
| Systematic assessment of long-read RNA-seq methods for transcript identification and quantification FJ Pardo-Palacios, D Wang, F Reese, M Diekhans, S Carbonell-Sala, ... Nature methods, 1-15, 2024 | 37 | 2024 |
| Human proteomic variation revealed by combining RNA-Seq proteogenomics and global post-translational modification (G-PTM) search strategy AJ Cesnik, MR Shortreed, GM Sheynkman, BL Frey, LM Smith Journal of proteome research 15 (3), 800-808, 2016 | 37 | 2016 |
| Endothelial cell cycle state determines propensity for arterial-venous fate NW Chavkin, G Genet, M Poulet, ED Jeffery, C Marziano, N Genet, ... Nature communications 13 (1), 5891, 2022 | 36 | 2022 |
| sapFinder: an R/Bioconductor package for detection of variant peptides in shotgun proteomics experiments B Wen, S Xu, GM Sheynkman, Q Feng, L Lin, Q Wang, X Xu, J Wang, ... Bioinformatics 30 (21), 3136-3138, 2014 | 33 | 2014 |
| ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms GM Sheynkman, KS Tuttle, F Laval, E Tseng, JG Underwood, L Yu, ... Nature communications 11 (1), 2326, 2020 | 29 | 2020 |
