AAindex: amino acid index database, progress report 2008 S Kawashima, P Pokarowski, M Pokarowska, A Kolinski, T Katayama, ... Nucleic acids research 36 (suppl_1), D202-D205, 2007 | 1156 | 2007 |
Coarse-grained protein models and their applications S Kmiecik, D Gront, M Kolinski, L Wieteska, AE Dawid, A Kolinski Chemical reviews 116 (14), 7898-7936, 2016 | 1036 | 2016 |
Topology fingerprint approach to the inverse protein folding problem A Godzik, A Kolinski, J Skolnick Journal of molecular biology 227 (1), 227-238, 1992 | 488 | 1992 |
Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme A Kolinski, J Skolnick Proteins: Structure, Function, and Bioinformatics 18 (4), 338-352, 1994 | 403 | 1994 |
Simulations of the folding of a globular protein J Skolnick, A Kolinski Science 250 (4984), 1121-1125, 1990 | 392 | 1990 |
Protein modeling and structure prediction with a reduced representation A Koliński Acta Biochimica Polonica 51, 2004 | 386 | 2004 |
CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site M Kurcinski, M Jamroz, M Blaszczyk, A Kolinski, S Kmiecik Nucleic acids research 43 (W1), W419-W424, 2015 | 377 | 2015 |
TOUCHSTONE II: a new approach to ab initio protein structure prediction Y Zhang, A Kolinski, J Skolnick Biophysical journal 85 (2), 1145-1164, 2003 | 334 | 2003 |
MONSSTER: a method for folding globular proteins with a small number of distance restraints J Skolnick, A Kolinski, AR Ortiz Journal of molecular biology 265 (2), 217-241, 1997 | 316 | 1997 |
CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures A Kuriata, AM Gierut, T Oleniecki, MP Ciemny, A Kolinski, M Kurcinski, ... Nucleic acids research 46 (W1), W338-W343, 2018 | 315 | 2018 |
Structural genomics and its importance for gene function analysis J Skolnick, JS Fetrow, A Kolinski Nature biotechnology 18 (3), 283-287, 2000 | 302 | 2000 |
Protein–peptide docking: opportunities and challenges M Ciemny, M Kurcinski, K Kamel, A Kolinski, N Alam, O Schueler-Furman, ... Drug discovery today 23 (8), 1530-1537, 2018 | 270 | 2018 |
Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct? J Skolnick, A Godzik, L Jaroszewski, A Kolinski Protein science 6 (3), 676-688, 1997 | 252 | 1997 |
Dynamic Monte Carlo simulations of a new lattice model of globular protein folding, structure and dynamics J Skolnick, A Kolinski Journal of molecular biology 221 (2), 499-531, 1991 | 243 | 1991 |
Reduced models of proteins and their applications A Kolinski, J Skolnick Polymer 45 (2), 511-524, 2004 | 240 | 2004 |
A general method for the prediction of the three dimensional structure and folding pathway of globular proteins: application to designed helical proteins A Kolinski, A Godzik, J Skolnick The Journal of chemical physics 98 (9), 7420-7433, 1993 | 228 | 1993 |
Assessing energy functions for flexible docking M Vieth, JD Hirst, A Kolinski, CL Brooks III Journal of Computational Chemistry 19 (14), 1612-1622, 1998 | 216 | 1998 |
Ab initio folding of proteins using restraints derived from evolutionary information AR Ortiz, A Kolinski, P Rotkiewicz, B Ilkowski, J Skolnick Proteins: Structure, Function, and Bioinformatics 37 (S3), 177-185, 1999 | 184 | 1999 |
TOUCHSTONE: An ab initio protein structure prediction method that uses threading-based tertiary restraints D Kihara, H Lu, A Kolinski, J Skolnick Proceedings of the National Academy of Sciences 98 (18), 10125-10130, 2001 | 183 | 2001 |
Monte Carlo simulations of protein folding. II. Application to protein A, ROP, and crambin A Kolinski, J Skolnick Proteins: Structure, Function, and Bioinformatics 18 (4), 353-366, 1994 | 183 | 1994 |