Todd J. Treangen 个人学术档案

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Sergey KorenAssociate Investigator, NHGRI/NIH在 nih.gov 的电子邮件经过验证
Adam M. PhillippyDirector, Center for Genomics and Data Science Research, NHGRI, NIH在 nih.gov 的电子邮件经过验证
Mihai PopProfessor of Computer Science, University of Maryland, College Park在 umd.edu 的电子邮件经过验证
Ryan Leo ElworthPostdoctoral Scientist, Rice University在 rice.edu 的电子邮件经过验证
Nicolae SapovalPostdoctoral Researcher, Department of Computer Science, Rice University在 rice.edu 的电子邮件经过验证
Brian OndovYale School of Medicine在 yale.edu 的电子邮件经过验证
Nicholas BergmanDirector, National Biodefense Analysis and Countermeasures Center在 st.dhs.gov 的电子邮件经过验证
Michael NuteRice University在 rice.edu 的电子邮件经过验证
Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins University在 jhu.edu 的电子邮件经过验证
Sonia VillapolHouston Methodist Research Institute在 houstonmethodist.org 的电子邮件经过验证
Bryce KilleRice University在 rice.edu 的电子邮件经过验证
Advait BalajiRice University在 rice.edu 的电子邮件经过验证
Kristen D. CurryPhD student in Computer Science, Rice University在 rice.edu 的电子邮件经过验证
Eduardo RochaCNRS, Institut Pasteur在 pasteur.fr 的电子邮件经过验证
Daniel D SommerNational Biodefense Analysis and Countermeasures Center在 nbacc.dhs.gov 的电子邮件经过验证
Yunxi LiuDepartment of Computer Science, Rice University在 rice.edu 的电子邮件经过验证
Lauren B. StadlerRice University在 rice.edu 的电子邮件经过验证
Aaron DarlingIndependent在 illumina.com 的电子邮件经过验证
Fritz J SedlazeckHuman Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston TX 77030在 bcm.edu 的电子邮件经过验证
Krista (Fritz) TernusSignature Science, LLC在 signaturescience.com 的电子邮件经过验证

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Todd J. Treangen

Associate Professor, Department of Computer Science, Rice University

在 rice.edu 的电子邮件经过验证 - 首页

Bioinformatics Computational Genomics Metagenomics


标题按引用次数排序按年份排序按标题排序	引用次数引用次数	年份
Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012	10757	2012
Mash: fast genome and metagenome distance estimation using MinHash BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ... Genome biology 17, 1-14, 2016	2729	2016
A framework for human microbiome research nature 486 (7402), 215-221, 2012	2486	2012
Repetitive DNA and next-generation sequencing: computational challenges and solutions TJ Treangen, SL Salzberg Nature Reviews Genetics, 2011	2092	2011
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes TJ Treangen, BD Ondov, S Koren, AM Phillippy Genome biology 15, 1-15, 2014	1599	2014
GAGE: A critical evaluation of genome assemblies and assembly algorithms SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ... Genome research 22 (3), 557-567, 2012	898	2012
Structure, function and diversity of the healthy human microbiome HMP Consortium nature 486 (7402), 207-214, 2012	658	2012
Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes TJ Treangen, EPC Rocha PLoS genetics 7 (1), e1001284, 2011	587	2011
Deep sequencing of the oral microbiome reveals signatures of periodontal disease B Liu, LL Faller, N Klitgord, V Mazumdar, M Ghodsi, DD Sommer, ... PloS one 7 (6), e37919, 2012	488	2012
Comprehensive multi-omics analysis reveals mitochondrial stress as a central biological hub for spaceflight impact WA da Silveira, H Fazelinia, SB Rosenthal, EC Laiakis, MS Kim, ... Cell 183 (5), 1185-1201. e20, 2020	273	2020
Next generation sequence assembly with AMOS TJ Treangen, DD Sommer, FE Angly, S Koren, M Pop Current Protocols in Bioinformatics 33 (1), 11.8. 1-11.8. 18, 2011	263	2011
Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences B Liu, T Gibbons, M Ghodsi, T Treangen, M Pop BMC Genomics 12 (Suppl 2), S4, 2011	262	2011
Current progress and open challenges for applying deep learning across the biosciences N Sapoval, A Aghazadeh, MG Nute, DA Antunes, A Balaji, R Baraniuk, ... Nature Communications 13 (1), 1728, 2022	246	2022
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline TJ Treangen, S Koren, DD Sommer, B Liu, I Astrovskaya, B Ondov, ... Genome Biology 14 (1), R2, 2013	240	2013
A new rhesus macaque assembly and annotation for next-generation sequencing analyses AV Zimin, AS Cornish, MD Maudhoo, RM Gibbs, X Zhang, S Pandey, ... Biology direct 9, 1-15, 2014	191	2014
Genesis, effects and fates of repeats in prokaryotic genomes TJ Treangen, AL Abraham, M Touchon, EPC Rocha FEMS microbiology reviews 33 (3), 539-571, 2009	182	2009
Bambus 2: scaffolding metagenomes S Koren, TJ Treangen, M Pop Bioinformatics 27 (21), 2964-2971, 2011	174	2011
RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification DJ Nasko, S Koren, AM Phillippy, TJ Treangen Genome biology 19, 1-10, 2018	162	2018
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes ND Olson, TJ Treangen, CM Hill, V Cepeda-Espinoza, J Ghurye, S Koren, ... Briefings in bioinformatics 20 (4), 1140-1150, 2019	157	2019
Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data KD Curry, Q Wang, MG Nute, A Tyshaieva, E Reeves, S Soriano, Q Wu, ... Nature methods 19 (7), 845-853, 2022	152	2022

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