The human gut virome: inter-individual variation and dynamic response to diet S Minot, R Sinha, J Chen, H Li, SA Keilbaugh, GD Wu, JD Lewis, ... Genome research 21 (10), 1616-1625, 2011 | 960 | 2011 |
Rapid evolution of the human gut virome S Minot, A Bryson, C Chehoud, GD Wu, JD Lewis, FD Bushman Proceedings of the National Academy of Sciences 110 (30), 12450-12455, 2013 | 572 | 2013 |
Comprehensive benchmarking and ensemble approaches for metagenomic classifiers ABR McIntyre, R Ounit, E Afshinnekoo, RJ Prill, E Hénaff, N Alexander, ... Genome biology 18 (1), 1-19, 2017 | 273 | 2017 |
The human skin double-stranded DNA virome: topographical and temporal diversity, genetic enrichment, and dynamic associations with the host microbiome GD Hannigan, JS Meisel, AS Tyldsley, Q Zheng, BP Hodkinson, ... MBio 6 (5), 10.1128/mbio. 01578-15, 2015 | 234 | 2015 |
Hypervariable loci in the human gut virome S Minot, S Grunberg, GD Wu, JD Lewis, FD Bushman Proceedings of the National Academy of Sciences 109 (10), 3962-3966, 2012 | 189 | 2012 |
Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer A Kilianski, JL Haas, EJ Corriveau, AT Liem, KL Willis, DR Kadavy, ... Gigascience 4 (1), s13742-015-0051-z, 2015 | 182 | 2015 |
MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach BL Brown, M Watson, SS Minot, MC Rivera, RB Franklin Gigascience 6 (3), gix007, 2017 | 134 | 2017 |
One codex: a sensitive and accurate data platform for genomic microbial identification SS Minot, N Krumm, NB Greenfield BioRxiv, 027607, 2015 | 134 | 2015 |
Admixture and recombination among Toxoplasma gondii lineages explain global genome diversity S Minot, MB Melo, F Li, D Lu, W Niedelman, SS Levine, JPJ Saeij Proceedings of the National Academy of Sciences 109 (33), 13458-13463, 2012 | 105 | 2012 |
RNAseq Analysis of the Parasitic Nematode Strongyloides stercoralis Reveals Divergent Regulation of Canonical Dauer Pathways JD Stoltzfus, S Minot, M Berriman, TJ Nolan, JB Lok PLoS neglected tropical diseases 6 (10), e1854, 2012 | 89 | 2012 |
Effect of the intratumoral microbiota on spatial and cellular heterogeneity in cancer JL Galeano Niño, H Wu, KD LaCourse, AG Kempchinsky, A Baryiames, ... Nature 611 (7937), 810-817, 2022 | 72 | 2022 |
Validation of high throughput sequencing and microbial forensics applications B Budowle, ND Connell, A Bielecka-Oder, RR Colwell, CR Corbett, ... Investigative genetics 5 (1), 1-18, 2014 | 70 | 2014 |
Metagenomic analysis reveals clinical SARS-CoV-2 infection and bacterial or viral superinfection and colonization V Peddu, RC Shean, H Xie, L Shrestha, GA Perchetti, SS Minot, ... Clinical chemistry 66 (7), 966-972, 2020 | 59 | 2020 |
Global divergence of the human follicle mite Demodex folliculorum: persistent associations between host ancestry and mite lineages MF Palopoli, DJ Fergus, S Minot, DT Pei, WB Simison, I Fernandez-Silva, ... Proceedings of the National Academy of Sciences 112 (52), 15958-15963, 2015 | 58 | 2015 |
Conservation of gene cassettes among diverse viruses of the human gut S Minot, GD Wu, JD Lewis, FD Bushman Public Library of Science 7 (8), e42342, 2012 | 42 | 2012 |
Complete mitochondrial genomes of the human follicle mites Demodex brevis and D. folliculorum: novel gene arrangement, truncated tRNA genes, and ancient divergence between species MF Palopoli, S Minot, D Pei, A Satterly, J Endrizzi BMC genomics 15 (1), 1-15, 2014 | 41 | 2014 |
Colonization of the live biotherapeutic product VE303 and modulation of the microbiota and metabolites in healthy volunteers M Dsouza, R Menon, E Crossette, SK Bhattarai, J Schneider, YG Kim, ... Cell Host & Microbe 30 (4), 583-598. e8, 2022 | 35 | 2022 |
Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease SS Minot, AD Willis Microbiome 7, 1-10, 2019 | 34 | 2019 |
Evolutionary and functional implications of hypervariable loci within the skin virome GD Hannigan, Q Zheng, JS Meisel, SS Minot, FD Bushman, EA Grice PeerJ 5, e2959, 2017 | 32 | 2017 |
Human tumor-infiltrating MAIT cells display hallmarks of bacterial antigen recognition in colorectal cancer S Li, Y Simoni, E Becht, CY Loh, N Li, D Lachance, SL Koo, TP Lim, ... Cell Reports Medicine 1 (3), 2020 | 30 | 2020 |