Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2 EZMFC Robert R. Stickels, Evan Murray, Pawan Kumar, Jilong Li, Jamie L ... Nature Biotechnology 39, 313–319, 2021 | 679 | 2021 |
Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment. et al. M. Lensink, S. Velankar Proteins 84 (Suppl 1), 323–348, 2016 | 167* | 2016 |
Proteomic Quantification and Site-Mapping of S-Nitrosylated Proteins Using Isobaric iodoTMT Reagents Z Qu, F Meng, RD Bomgarden, RI Viner, J Li, JC Rogers, J Cheng, ... Journal of proteome research 13 (7), 3200-3211, 2014 | 132 | 2014 |
WeFold: a coopetition for protein structure prediction GA Khoury, A Liwo, F Khatib, H Zhou, G Chopra, J Bacardit, LO Bortot, ... Proteins: Structure, Function, and Bioinformatics 82 (9), 1850-1868, 2014 | 74 | 2014 |
Transcriptomic analysis identifies gene networks regulated by estrogen receptor α (ERα) and ERβ that control distinct effects of different botanical estrogens P Gong, Z Madak-Erdogan, J Li, J Cheng, CM Greenlief, W Helferich, ... Nuclear receptor signaling 12 (1), nrs. 12001, 2014 | 71 | 2014 |
Large-Scale Model Quality Assessment for Improving Protein Tertiary Structure Prediction R Cao, D Bhattacharya, B Adhikari, J Li, J Cheng Bioinformatics 31 (12), i116-i123, 2015 | 65 | 2015 |
Dosage compensation and inverse effects in triple X metafemales of Drosophila L Sun, AF Johnson, RC Donohue, J Li, J Cheng, JA Birchler Proceedings of the National Academy of Sciences 110 (18), 7383-7388, 2013 | 59 | 2013 |
Male-specific lethal complex in Drosophila counteracts histone acetylation and does not mediate dosage compensation L Sun, HR Fernandez, RC Donohue, J Li, J Cheng, JA Birchler Proceedings of the National Academy of Sciences 110 (9), E808-E817, 2013 | 50 | 2013 |
The MULTICOM toolbox for protein structure prediction J Cheng, J Li, Z Wang, J Eickholt, X Deng BMC bioinformatics 13, 1-12, 2012 | 47 | 2012 |
Differential effect of aneuploidy on the X chromosome and genes with sex-biased expression in Drosophila L Sun, AF Johnson, J Li, AS Lambdin, J Cheng, JA Birchler Proceedings of the National Academy of Sciences 110 (41), 16514-16519, 2013 | 45 | 2013 |
NitroDIGE analysis reveals inhibition of protein S-nitrosylation by epigallocatechin gallates in lipopolysaccharide-stimulated microglial cells Z Qu, F Meng, H Zhou, J Li, Q Wang, F Wei, J Cheng, CM Greenlief, ... Journal of neuroinflammation 11, 1-13, 2014 | 32 | 2014 |
Messenger RNA profile analysis deciphers new Esrrb responsive genes in prostate cancer cells Y Lu, J Li, J Cheng, D Lubahn BMC Molecular Biology 16 (1), 2015 | 31 | 2015 |
Proteomic Analysis of the Effects of Aged Garlic Extract and its FruArg Component on Lipopolysaccharide-induced Neuroinflammatory Response in Microglial Cells H Zhou, Z Qu, J Li PLoS ONE 9, e113531, 2014 | 29 | 2014 |
Designing and benchmarking the MULTICOM protein structure prediction system J Li, X Deng, J Eickholt, J Cheng BMC structural biology 13, 1-14, 2013 | 29 | 2013 |
What if we ignore the random effects when analyzing RNA-seq data in a multifactor experiment S Cui, T Ji, J Li, J Cheng, J Qiu Stat. Appl. Genet. Mol. Biol 15 (2), 87-105, 2016 | 28 | 2016 |
Genes targeted by the HedgeHog-signaling pathway can be regulated by Estrogen related receptor Y Lu, J Li, J Cheng, D Lubahn BMC Molecular Biology 16 (1), 2015 | 26 | 2015 |
A Large-Scale Conformation Sampling and Evaluation Server for Protein Tertiary Structure Prediction and its Assessment in CASP11 J Li, R Cao, J Cheng BMC bioinformatics 16, 337, 2015 | 25 | 2015 |
Massive integration of diverse protein quality assessment methods to improve template based modeling in CASP11 R Cao, D Bhattacharya, B Adhikari, J Li, J Cheng Proteins, 2015 | 25 | 2015 |
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12 C Keasar, LJ McGuffin, B Wallner, G Chopra, B Adhikari, D Bhattacharya, ... Scientific reports 8 (1), 9939, 2018 | 23 | 2018 |
Reconstruction of Metabolic Pathways by Combining Probabilistic Graphical Model-based and Knowledge-based Methods Q Qi, J Li, J Cheng BMC Proceeding 8 (S6), S5, 2014 | 23 | 2014 |