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Wisdom of crowds for robust gene network inference D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods 9 (8), 796-804, 2012 | 1790 | 2012 |
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The Rosetta all-atom energy function for macromolecular modeling and design RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ... Journal of chemical theory and computation 13 (6), 3031-3048, 2017 | 1298 | 2017 |
Sparse and compositionally robust inference of microbial ecological networks ZD Kurtz, CL Müller, ER Miraldi, DR Littman, MJ Blaser, RA Bonneau PLoS computational biology 11 (5), e1004226, 2015 | 1287 | 2015 |
A validated regulatory network for Th17 cell specification M Ciofani, A Madar, C Galan, ML Sellars, K Mace, F Pauli, A Agarwal, ... Cell 151 (2), 289-303, 2012 | 1274 | 2012 |
Innate immune detection of the type III secretion apparatus through the NLRC4 inflammasome EA Miao, DP Mao, N Yudkovsky, R Bonneau, CG Lorang, SE Warren, ... Proceedings of the National Academy of Sciences 107 (7), 3076-3080, 2010 | 908 | 2010 |
High-definition spatial transcriptomics for in situ tissue profiling S Vickovic, G Eraslan, F Salmén, J Klughammer, L Stenbeck, D Schapiro, ... Nature methods 16 (10), 987-990, 2019 | 860 | 2019 |
Ab initio protein structure prediction of CASP III targets using ROSETTA KT Simons, R Bonneau, I Ruczinski, D Baker Proteins: Structure, Function, and Bioinformatics 37 (S3), 171-176, 1999 | 745 | 1999 |
The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo R Bonneau, DJ Reiss, P Shannon, M Facciotti, L Hood, NS Baliga, ... Genome biology 7, 1-16, 2006 | 668 | 2006 |
Macromolecular modeling and design in Rosetta: recent methods and frameworks JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ... Nature methods 17 (7), 665-680, 2020 | 603 | 2020 |
An IL-23R/IL-22 circuit regulates epithelial serum amyloid A to promote local effector Th17 responses T Sano, W Huang, JA Hall, Y Yang, A Chen, SJ Gavzy, JY Lee, JW Ziel, ... Cell 163 (2), 381-393, 2015 | 581 | 2015 |
Structure-based protein function prediction using graph convolutional networks V Gligorijević, PD Renfrew, T Kosciolek, JK Leman, D Berenberg, ... Nature communications 12 (1), 3168, 2021 | 568 | 2021 |
How social media facilitates political protest: Information, motivation, and social networks JT Jost, P Barberá, R Bonneau, M Langer, M Metzger, J Nagler, J Sterling, ... Political psychology 39, 85-118, 2018 | 556 | 2018 |
Why are there hotspot mutations in the TP53 gene in human cancers? EH Baugh, H Ke, AJ Levine, RA Bonneau, CS Chan Cell Death & Differentiation 25 (1), 154-160, 2018 | 547 | 2018 |
Structural bioinformatics J Gu, PE Bourne John Wiley & Sons, 2009 | 541 | 2009 |
c-MAF-dependent regulatory T cells mediate immunological tolerance to a gut pathobiont M Xu, M Pokrovskii, Y Ding, R Yi, C Au, OJ Harrison, C Galan, Y Belkaid, ... Nature 554 (7692), 373-377, 2018 | 448 | 2018 |
Ab initio protein structure prediction: progress and prospects R Bonneau, D Baker Annual review of biophysics and biomolecular structure 30 (1), 173-189, 2001 | 447 | 2001 |
Who leads? Who follows? Measuring issue attention and agenda setting by legislators and the mass public using social media data P Barberá, A Casas, J Nagler, PJ Egan, R Bonneau, JT Jost, JA Tucker American Political Science Review 113 (4), 883-901, 2019 | 441 | 2019 |
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