Cell2location maps fine-grained cell types in spatial transcriptomics V Kleshchevnikov, A Shmatko, E Dann, A Aivazidis, HW King, T Li, ... Nature biotechnology 40 (5), 661-671, 2022 | 489* | 2022 |
Predicting the mutations generated by repair of Cas9-induced double-strand breaks F Allen, L Crepaldi, C Alsinet, AJ Strong, V Kleshchevnikov, P De Angeli, ... Nature biotechnology 37 (1), 64-72, 2019 | 486 | 2019 |
Astrocyte layers in the mammalian cerebral cortex revealed by a single-cell in situ transcriptomic map OA Bayraktar, T Bartels, S Holmqvist, V Kleshchevnikov, A Martirosyan, ... Nature neuroscience 23 (4), 500-509, 2020 | 370 | 2020 |
Cells of the human intestinal tract mapped across space and time R Elmentaite, N Kumasaka, K Roberts, A Fleming, E Dann, HW King, ... Nature 597 (7875), 250-255, 2021 | 316 | 2021 |
Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro L Garcia-Alonso, LF Handfield, K Roberts, K Nikolakopoulou, ... Nature genetics 53 (12), 1698-1711, 2021 | 307 | 2021 |
A Python library for probabilistic analysis of single-cell omics data A Gayoso, R Lopez, G Xing, P Boyeau, V Valiollah Pour Amiri, J Hong, ... Nature biotechnology 40 (2), 163-166, 2022 | 286 | 2022 |
Mapping the developing human immune system across organs C Suo, E Dann, I Goh, L Jardine, V Kleshchevnikov, JE Park, RA Botting, ... Science 376 (6597), eabo0510, 2022 | 167 | 2022 |
Spatial genomics maps the structure, nature and evolution of cancer clones A Lomakin, J Svedlund, C Strell, M Gataric, A Shmatko, G Rukhovich, ... Nature 611 (7936), 594-602, 2022 | 91* | 2022 |
A spatially resolved atlas of the human lung characterizes a gland-associated immune niche E Madissoon, AJ Oliver, V Kleshchevnikov, A Wilbrey-Clark, K Polanski, ... Nature Genetics 55 (1), 66-77, 2023 | 82* | 2023 |
A human embryonic limb cell atlas resolved in space and time B Zhang, P He, JEG Lawrence, S Wang, E Tuck, BA Williams, K Roberts, ... Nature, 1-11, 2023 | 21 | 2023 |
Transcriptome-wide spatial RNA profiling maps the cellular architecture of the developing human neocortex K Roberts, A Aivazidis, V Kleshchevnikov, T Li, R Fropf, M Rhodes, ... BioRxiv, 2021.03. 20.436265, 2021 | 15 | 2021 |
Use of viral motif mimicry improves the proteome-wide discovery of human linear motifs B Wadie, V Kleshchevnikov, E Sandaltzopoulou, C Benz, E Petsalaki Cell reports 39 (5), 2022 | 11 | 2022 |
Human skeletal muscle aging atlas VR Kedlian, Y Wang, T Liu, X Chen, L Bolt, C Tudor, Z Shen, ES Fasouli, ... Nature aging, 1-18, 2024 | 10 | 2024 |
Model-based inference of RNA velocity modules improves cell fate prediction A Aivazidis, F Memi, V Kleshchevnikov, B Clarke, O Stegle, O Bayraktar bioRxiv, 2023.08. 03.551650, 2023 | 5 | 2023 |
A spatial human thymus cell atlas mapped to a continuous tissue axis N Yayon, VR Kedlian, L Boehme, C Suo, B Wachter, RT Beuschel, ... bioRxiv, 2023 | 2 | 2023 |
Defining and benchmarking open problems in single-cell analysis MD Luecken, S Gigante, DB Burkhardt, R Cannoodt, DC Strobl, ... Research Square, 2024 | | 2024 |
Probabilistic models to resolve cell identity and tissue architecture V Kleshchevnikov | | 2024 |
Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro (vol 53, pg 1698, 201) L Garcia-Alonso, LF Handfield, K Roberts, K Nikolakopoulou, ... NATURE GENETICS 55 (1), 165-165, 2023 | | 2023 |