RNA-Seq differential expression analysis: An extended review and a software tool J Costa-Silva, D Domingues, FM Lopes PloS one 12 (12), e0190152, 2017 | 685 | 2017 |
Brazilian bibliometric coauthorship networks JP Mena‐Chalco, LA Digiampietri, FM Lopes, RM Cesar Journal of the Association for Information Science and Technology 65 (7 …, 2014 | 161 | 2014 |
Feature selection environment for genomic applications FM Lopes, DC Martins-Jr, RM Cesar-Jr BMC bioinformatics 9 (1), 451, 2008 | 75 | 2008 |
Networking the host immune response in Plasmodium vivax malaria VRR Mendonca, ATL Queiroz, FM Lopes, BB Andrade, M Barral-Netto Malaria journal 12, 1-11, 2013 | 74 | 2013 |
A feature selection technique for inference of graphs from their known topological properties: Revealing scale-free gene regulatory networks FM Lopes, DC Martins Jr, J Barrera, RM Cesar Jr Information Sciences 272, 1-15, 2014 | 61 | 2014 |
Gene expression complex networks: synthesis, identification, and analysis FM Lopes, RM Cesar Jr, LDF Costa Journal of Computational Biology 18 (10), 1353-1367, 2011 | 51 | 2011 |
BASiNET—BiologicAl Sequences NETwork: a case study on coding and non-coding RNAs identification EA Ito, I Katahira, FFR Vicente, LFP Pereira, FM Lopes Nucleic acids research 46 (16), e96-e96, 2018 | 47 | 2018 |
Inference of gene regulatory networks from time series by Tsallis entropy FM Lopes, EA de Oliveira, RM Cesar-Jr BMC systems biology 5 (1), 61, 2011 | 46 | 2011 |
A database for the taxonomic and phylogenetic identification of the genus Bradyrhizobium using multilocus sequence analysis H Azevedo, FM Lopes, PR Silla, M Hungria BMC genomics 16, 1-11, 2015 | 36 | 2015 |
Feature extraction approaches for biological sequences: a comparative study of mathematical features RP Bonidia, LDH Sampaio, DS Domingues, AR Paschoal, FM Lopes, ... Briefings in Bioinformatics 22 (5), bbab011, 2021 | 35 | 2021 |
Ptaquiloside reduces NK cell activities by enhancing metallothionein expression, which is prevented by selenium AO Latorre, BD Caniceiro, H Fukumasu, DR Gardner, FM Lopes, ... Toxicology 304, 100-108, 2013 | 26 | 2013 |
Classification of texture based on bag-of-visual-words through complex networks GVL de Lima, PTM Saito, FM Lopes, PH Bugatti Expert Systems with Applications 133, 215-224, 2019 | 25 | 2019 |
AGN simulation and validation model FM Lopes, RM Cesar-Jr, L da F. Costa Advances in Bioinformatics and Computational Biology, 169-173, 2008 | 24 | 2008 |
A Complex Network-Based Approach to the Analysis and Classification of Images GVL de Lima, TR Castilho, PH Bugatti, PTM Saito, FM Lopes Progress in Pattern Recognition, Image Analysis, Computer Vision, and …, 2015 | 22 | 2015 |
Contributing to agriculture by using soybean seed data from the tetrazolium test DF Pereira, PH Bugatti, FM Lopes, ALSM Souza, PTM Saito Data in Brief 23, 103652, 2019 | 21 | 2019 |
Entropic biological score: a cell cycle investigation for GRNs inference FM Lopes, SS Ray, RF Hashimoto, RM Cesar Jr Gene 541 (2), 129-137, 2014 | 21 | 2014 |
3D facial expression analysis by using 2D and 3D wavelet transforms SCD Pinto, JP Mena-Chalco, FM Lopes, L Velho, RM Cesar 2011 18th IEEE International Conference on Image Processing, 1281-1284, 2011 | 20 | 2011 |
Temporal progress of gene expression analysis with RNA-Seq data: A review on the relationship between computational methods J Costa-Silva, DS Domingues, D Menotti, M Hungria, FM Lopes Computational and structural biotechnology journal 21, 86-98, 2023 | 19 | 2023 |
Comparative study of GRNs inference methods based on feature selection by mutual information FM Lopes, DC Martins-Jr, RM Cesar-Jr Genomic Signal Processing and Statistics, 2009. GENSIPS 2009. IEEE …, 2009 | 19 | 2009 |
SFFS-MR: a floating search strategy for GRNs inference FM Lopes, DC Martins-Jr, J Barrera, RM Cesar-Jr Pattern Recognition in Bioinformatics, 407-418, 2010 | 17 | 2010 |