| shinyCircos: an R/Shiny application for interactive creation of Circos plot Y Yu, Y Ouyang, W Yao Bioinformatics 34 (7), 1229-1231, 2017 | 254 | 2017 |
| A Comprehensive Online Database for Exploring∼ 20,000 Public Arabidopsis RNA-Seq Libraries H Zhang, F Zhang, Y Yu, L Feng, J Jia, B Liu, B Li, H Guo, J Zhai Molecular Plant 13 (9), 1231-1233, 2020 | 113 | 2020 |
| funRiceGenes dataset for comprehensive understanding and application of rice functional genes W Yao, G Li, Y Yu, Y Ouyang GigaScience 7 (1), gix119, 2017 | 108 | 2017 |
| Plant Public RNA-seq Database: a comprehensive online database for expression analysis of similar to 45 000 plant public RNA-Seq libraries Y Yu, H Zhang, Y Long, Y Shu, J Zhai PLANT BIOTECHNOLOGY JOURNAL, 2022 | 59 | 2022 |
| Soybean DICER-LIKE2 Regulates Seed Coat Color via Production of Primary 22-Nucleotide Small Interfering RNAs from Long Inverted Repeats J Jia, R Ji, Z Li, Y Yu, M Nakano, Y Long, L Feng, C Qin, D Lu, J Zhan, ... The Plant Cell 32 (12), 3662-3673, 2020 | 43 | 2020 |
| The E3 ubiquitin ligase HAF1 modulates circadian accumulation of EARLY FLOWERING3 to control heading date in rice under long-day conditions C Zhu, Q Peng, D Fu, D Zhuang, Y Yu, M Duan, W Xie, Y Cai, Y Ouyang, ... The Plant Cell 30 (10), 2352-2367, 2018 | 37 | 2018 |
| Processes underlying a reproductive barrier in indica-japonica rice hybrids revealed by transcriptome analysis Y Zhu, Y Yu, K Cheng, Y Ouyang, J Wang, L Gong, Q Zhang, X Li, J Xiao, ... Plant physiology 174 (3), 1683-1696, 2017 | 24 | 2017 |
| An atlas of plant full-length RNA reveals tissue-specific and monocots–dicots conserved regulation of poly (A) tail length J Jia, W Lu, B Liu, H Fang, Y Yu, W Mo, H Zhang, X Jin, Y Shu, Y Long, ... Nature Plants 8 (9), 1118-1126, 2022 | 23 | 2022 |
| Multiplex CRISPR-Cas9 editing of DNA methyltransferases in rice uncovers a class of non-CG methylation specific for GC-rich regions D Hu, Y Yu, C Wang, Y Long, Y Liu, L Feng, D Lu, B Liu, J Jia, R Xia, J Du, ... The Plant Cell, 2021 | 22 | 2021 |
| shinyChromosome: An R/Shiny Application for Interactive Creation of Non-circular Plots of Whole Genomes Y Yu, W Yao, Y Wang, F Huang Genomics, Proteomics & Bioinformatics, 2020 | 21 | 2020 |
| Landscape of transcription termination in Arabidopsis revealed by single-molecule nascent RNA sequencing W Mo, B Liu, H Zhang, X Jin, D Lu, Y Yu, Y Liu, J Jia, Y Long, X Deng, ... Genome biology 22 (1), 1-21, 2021 | 20 | 2021 |
| Pore‐C simultaneously captures genome‐wide multi‐way chromatin interaction and associated DNA methylation status in Arabidopsis Z Li, Y Long, Y Yu, F Zhang, H Zhang, Z Liu, J Jia, W Mo, SZ Tian, ... Plant Biotechnology Journal 20 (6), 1009, 2022 | 8 | 2022 |
| PPRD: A comprehensive online database for expression analysis of~ 45,000 plant public RNA-Seq libraries Y Yu, H Zhang, Y Long, Y Shu, J Zhai BioRxiv, 2022.01. 28.477949, 2022 | 8 | 2022 |
| Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis S He, Y Yu, L Wang, J Zhang, Z Bai, G Li, P Li, X Feng The Plant Cell, koae034, 2024 | 5 | 2024 |
| Prezygotic Reproductive Isolation and Fertility in Crosses between Indica and Japonica Subspecies SS NIU, YM YU, CG XU, GW LI, YD OUYANG SCIENTIA SINICA Vitae 44 (8), 815-821, 2014 | 4 | 2014 |
| An atlas of plant full-length RNA reveals tissue-specific and evolutionarily-conserved regulation of poly (A) tail length J Jia, W Lu, B Liu, Y Yu, X Jin, Y Shu, Y Long, J Zhai bioRxiv, 2022.01. 21.477033, 2022 | 3 | 2022 |
| Mapping quantitative trait loci using binned genotypes W Yao, G Li, Y Cui, Y Yu, Q Zhang, S Xu Journal of Genetics and Genomics 46 (7), 343-352, 2019 | 3 | 2019 |
| The chromatin will never forget Y Yu, J Zhai Nature Plants, 1-2, 2020 | 2 | 2020 |
