Detection and characterization of the SARS-CoV-2 lineage B. 1.526 in New York AP West Jr, JO Wertheim, JC Wang, TI Vasylyeva, JL Havens, ... Nature communications 12 (1), 4886, 2021 | 105 | 2021 |
Samplot: a platform for structural variant visual validation and automated filtering JR Belyeu, M Chowdhury, J Brown, BS Pedersen, MJ Cormier, ... Genome biology 22 (1), 161, 2021 | 74 | 2021 |
Detection of SARS-CoV-2 intra-host recombination during superinfection with Alpha and Epsilon variants in New York City JO Wertheim, JC Wang, M Leelawong, DP Martin, JL Havens, ... Nature communications 13 (1), 3645, 2022 | 28 | 2022 |
Introduction and establishment of SARS-CoV-2 Gamma variant in New York City in early 2021 TI Vasylyeva, CE Fang, M Su, JL Havens, E Parker, JC Wang, M Zeller, ... The Journal of Infectious Diseases 226 (12), 2142-2149, 2022 | 9 | 2022 |
Searching thousands of genomes to classify somatic and novel structural variants using STIX M Chowdhury, BS Pedersen, FJ Sedlazeck, AR Quinlan, RM Layer Nature methods 19 (4), 445-448, 2022 | 6 | 2022 |
Learning what a good structural variant looks like M Chowdhury, RM Layer bioRxiv, 2020.05. 22.111260, 2020 | 6 | 2020 |
Detection and characterization of the SARS-CoV-2 lineage B. 1.526 in New York. Nat Commun. 2021; 12 (1): 4886 AP West Jr, JO Wertheim, JC Wang, TI Vasylyeva, JL Havens, ... Epub 2021/08/11. https://doi. org/10.1038/s41467-021-25168-4 PMID: 34373458, 0 | 6 | |
Embracing firefly flash pattern variability with data-driven species classification O Martin, C Nguyen, R Sarfati, M Chowdhury, ML Iuzzolino, DMT Nguyen, ... Scientific Reports 14 (1), 3432, 2024 | 4 | 2024 |
Capturing intrahost recombination of SARS-CoV-2 during superinfection with Alpha and Epsilon variants in New York City JO Wertheim, JC Wang, M Leelawong, DP Martin, JL Havens, ... medRxiv, 2022.01. 18.22269300, 2022 | 4 | 2022 |
Combining signal and sequence to detect RNA polymerase initiation in ATAC-seq data IJ Tripodi, M Chowdhury, M Gruca, RD Dowell Plos one 15 (4), e0232332, 2020 | 3 | 2020 |
ATAC-seq signal processing and recurrent neural networks can identify RNA polymerase activity IJ Tripodi, M Chowdhury, R Dowell BioRxiv, 531517, 2019 | 2 | 2019 |
Implications of noncoding regulatory functions in the development of insulinomas M Ramos-Rodríguez, M Subirana-Granes, R Norris, V Sordi, Á Fernández, ... Cell Genomics 4 (8), 2024 | | 2024 |
Leveraging behavioral variability for robust classification of firefly flash signals C Nguyen, O Martin, C Nguyen, R Sarfati, M Chowdhury, M Iuzzolino, ... APS March Meeting Abstracts 2023, S14. 005, 2023 | | 2023 |
Author Correction: Searching thousands of genomes to classify somatic and novel structural variants using STIX M Chowdhury, BS Pedersen, FJ Sedlazeck, AR Quinlan, RM Layer Nature Methods 19 (6), 770, 2022 | | 2022 |
Taiwanese Mortgage Loan Premium and Conditional Heteroscedasticity in Post-1997 Asian Financial Crisis CV Nguyen, MAM Chowdhury, MM Ali Journal of Knowledge Globalization 8 (2), 2015 | | 2015 |