Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples GP Wagner, K Kin, VJ Lynch Theory in biosciences 131, 281-285, 2012 | 1919 | 2012 |
Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs A Kapusta, Z Kronenberg, VJ Lynch, X Zhuo, LA Ramsay, G Bourque, ... PLoS genetics 9 (4), e1003470, 2013 | 706 | 2013 |
Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals VJ Lynch, RD Leclerc, G May, GP Wagner Nature genetics 43 (11), 1154-1159, 2011 | 455 | 2011 |
TP53 copy number expansion is associated with the evolution of increased body size and an enhanced DNA damage response in elephants M Sulak, L Fong, K Mika, S Chigurupati, L Yon, NP Mongan, RD Emes, ... elife 5, e11994, 2016 | 293 | 2016 |
Evolutionary novelties GP Wagner, VJ Lynch Current Biology 20 (2), R48-R52, 2010 | 283 | 2010 |
Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy VJ Lynch, MC Nnamani, A Kapusta, K Brayer, SL Plaza, EC Mazur, ... Cell reports 10 (4), 551-561, 2015 | 258 | 2015 |
Inventing an arsenal: adaptive evolution and neofunctionalization of snake venom phospholipase A2 genes VJ Lynch BMC evolutionary biology 7, 1-14, 2007 | 252 | 2007 |
Transposable elements are the primary source of novelty in primate gene regulation M Trizzino, YS Park, M Holsbach-Beltrame, K Aracena, K Mika, ... Genome research 27 (10), 1623-1633, 2017 | 233 | 2017 |
Resurrecting the role of transcription factor change in developmental evolution VJ Lynch, GP Wagner Evolution 62 (9), 2131-2154, 2008 | 231 | 2008 |
The “fish-specific” Hox cluster duplication is coincident with the origin of teleosts KD Crow, PF Stadler, VJ Lynch, C Amemiya, GP Wagner Molecular Biology and Evolution 23 (1), 121-136, 2006 | 215 | 2006 |
The gene regulatory logic of transcription factor evolution GP Wagner, VJ Lynch Trends in Ecology & Evolution 23 (7), 377-385, 2008 | 186 | 2008 |
A model based criterion for gene expression calls using RNA-seq data GP Wagner, K Kin, VJ Lynch Theory in Biosciences 132, 159-164, 2013 | 185 | 2013 |
Elephantid genomes reveal the molecular bases of woolly mammoth adaptations to the Arctic VJ Lynch, OC Bedoya-Reina, A Ratan, M Sulak, DI Drautz-Moses, ... Cell reports 12 (2), 217-228, 2015 | 153 | 2015 |
Human leukocyte antigen F presents peptides and regulates immunity through interactions with NK cell receptors CL Dulberger, CP McMurtrey, A Hölzemer, KE Neu, V Liu, AM Steinbach, ... Immunity 46 (6), 1018-1029. e7, 2017 | 125 | 2017 |
Convergent evolution of endometrial prolactin expression in primates, mice, and elephants through the independent recruitment of transposable elements D Emera, C Casola, VJ Lynch, DE Wildman, D Agnew, GP Wagner Molecular biology and evolution 29 (1), 239-247, 2012 | 121 | 2012 |
Regulatory evolution through divergence of a phosphoswitch in the transcription factor CEBPB VJ Lynch, G May, GP Wagner Nature 480 (7377), 383-386, 2011 | 121 | 2011 |
Adaptive changes in the transcription factor HoxA-11 are essential for the evolution of pregnancy in mammals VJ Lynch, A Tanzer, Y Wang, FC Leung, B Gellersen, D Emera, ... Proceedings of the National Academy of Sciences 105 (39), 14928-14933, 2008 | 120 | 2008 |
HoxA-11 and FOXO1A cooperate to regulate decidual prolactin expression: towards inferring the core transcriptional regulators of decidual genes VJ Lynch, K Brayer, B Gellersen, GP Wagner PloS one 4 (9), e6845, 2009 | 115 | 2009 |
A zombie LIF gene in elephants is upregulated by TP53 to induce apoptosis in response to DNA damage JM Vazquez, M Sulak, S Chigurupati, VJ Lynch Cell reports 24 (7), 1765-1776, 2018 | 112 | 2018 |
DID EGG-LAYING BOAS BREAK DOLLO'S LAW? PHYLOGENETIC EVIDENCE FOR REVERSAL TO OVIPARITY IN SAND BOAS (ERYX: BOIDAE) VJ Lynch, GP Wagner Evolution 64 (1), 207-216, 2010 | 97 | 2010 |