| Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery TL Parchman, KS Geist, JA Grahnen, CW Benkman, CA Buerkle BMC genomics 11, 1-16, 2010 | 491 | 2010 |
| The interface of protein structure, protein biophysics, and molecular evolution DA Liberles, SA Teichmann, I Bahar, U Bastolla, J Bloom, ... Protein Science 21 (6), 769-785, 2012 | 235 | 2012 |
| Toward a general model for the evolutionary dynamics of gene duplicates A Konrad, AI Teufel, JA Grahnen, DA Liberles Genome biology and evolution 3, 1197-1209, 2011 | 72 | 2011 |
| The Evolution of Protein Structures and Structural Ensembles Under Functional Constraint J Siltberg-Liberles, JA Grahnen, DA Liberles Genes 2 (4), 748-762, 2011 | 61 | 2011 |
| Biophysical and structural considerations for protein sequence evolution JA Grahnen, P Nandakumar, J Kubelka, DA Liberles BMC evolutionary biology 11, 1-18, 2011 | 55 | 2011 |
| Binding constraints on the evolution of enzymes and signalling proteins: the important role of negative pleiotropy DA Liberles, MDM Tisdell, JA Grahnen Proceedings of the Royal Society B: Biological Sciences 278 (1714), 1930-1935, 2011 | 41 | 2011 |
| Consensus sequence identification PY Lum, E Cadag, J Grahnen, J Lewis, H Sexton US Patent 10,102,271, 2018 | 31* | 2018 |
| DFT-Based Simulations of IR Amide I′ Spectra for a Small Protein in Solution. Comparison of Explicit and Empirical Solvent Models JA Grahnen, KE Amunson, J Kubelka The Journal of Physical Chemistry B 114 (40), 13011-13020, 2010 | 30 | 2010 |
| CASS: Protein sequence simulation with explicit genotype-phenotype mapping JA Grahnen, DA Liberles Trends in Evolutionary Biology 4 (1), e9-e9, 2012 | 11 | 2012 |
| Fast side chain replacement in proteins using a coarse-grained approach for evaluating the effects of mutation during evolution JA Grahnen, J Kubelka, DA Liberles Journal of molecular evolution 73, 23-33, 2011 | 7 | 2011 |
| Modeling proteins at the interface of structure, evolution, and population genetics AI Teufel, JA Grahnen, DA Liberles Computational modeling of biological systems: from molecules to pathways …, 2012 | 6 | 2012 |
| Novel small molecules induced ROS accumulation and antitumor activity based on an oxidative stress gene signature. AA Protter, V Phan, T Mizuno, K Kim, B Louie, S Elmer, D Herman, ... Journal of Clinical Oncology 36 (15_suppl), e14575-e14575, 2018 | 1 | 2018 |
| Methods for treating a subtype of small cell lung cancer J Grahnen, PY Lum, S Zhewei, V Solovyev, HJ Chang US Patent App. 17/286,396, 2021 | | 2021 |
| Modeling the Influence of Protein Structure, Function and Biophysics on the Evolution of Protein-coding Sequences at the Genic and Genomic Levels JA Grahnen University of Wyoming, 2012 | | 2012 |
