| Inference and analysis of cell-cell communication using CellChat S Jin, CF Guerrero-Juarez, L Zhang, I Chang, R Ramos, CH Kuan, ... Nature Communications 12, 1088, 2021 | 3367 | 2021 |
| Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds CF Guerrero-Juarez, PH Dedhia, S Jin, R Ruiz-Vega, D Ma, Y Liu, ... Nature communications 10 (1), 650, 2019 | 439 | 2019 |
| Defining epidermal basal cell states during skin homeostasis and wound healing using single-cell transcriptomics D Haensel#, S Jin#, P Sun, R Cinco, M Dragan, Q Nguyen, Z Cang, ... Cell Reports 30 (11), 3932-3947. e6, 2020 | 173 | 2020 |
| The landscape of cell-cell communication through single-cell transcriptomics AA Almet, Z Cang, S Jin, Q Nie Current opinion in systems biology, 2021 | 145 | 2021 |
| scAI: an unsupervised approach for the integrative analysis of parallel single-cell transcriptomic and epigenomic profiles S Jin, L Zhang, Q Nie Genome Biology 21 (1), 1-19, 2020 | 137 | 2020 |
| scEpath: energy landscape-based inference of transition probabilities and cellular trajectories from single-cell transcriptomic data S Jin, AL MacLean, T Peng, Q Nie Bioinformatics 34 (12), 2077-2086, 2018 | 99 | 2018 |
| CA1-projecting subiculum neurons facilitate object–place learning Y Sun#, S Jin#, X Lin, L Chen, X Qiao, L Jiang, P Zhou, KG Johnston, ... Nature neuroscience 22 (11), 1857-1870, 2019 | 89 | 2019 |
| Characterizing and controlling the inflammatory network during influenza A virus infection S Jin, Y Li, R Pan, X Zou Scientific reports 4, 3799, 2014 | 66 | 2014 |
| Wound healing in aged skin exhibits systems-level alterations in cellular composition and cell-cell communication R Vu, S Jin, P Sun, D Haensel, QH Nguyen, M Dragan, K Kessenbrock, ... Cell Reports 40 (5), 111155, 2022 | 62 | 2022 |
| Deciphering deterioration mechanisms of complex diseases based on the construction of dynamic networks and systems analysis Y Li, S Jin, L Lei, Z Pan, X Zou Scientific reports 5, 9283, 2015 | 60 | 2015 |
| Circadian control of interferon-sensitive gene expression in murine skin EN Greenberg, ME Marshall, S Jin, S Venkatesh, M Dragan, LC Tsoi, ... Proceedings of the National Academy of Sciences, 2020 | 53 | 2020 |
| Murine interfollicular epidermal differentiation is gradualistic with GRHL3 controlling progression from stem to transition cell states Z Lin, S Jin, J Chen, Z Li, Z Lin, L Tang, Q Nie, B Andersen Nature Communications 11, 5434, 2020 | 45 | 2020 |
| CellChat for systematic analysis of cell-cell communication from single-cell and spatially resolved transcriptomics S Jin, MV Plikus, Q Nie bioRxiv, 2023.11. 05.565674, 2023 | 38 | 2023 |
| Multimodal analyses of vitiligo skin identifies tissue characteristics of stable disease J Shiu, L Zhang, G Lentsch, JL Flesher, S Jin, CM Polleys, SJ Jo, ... JCI insight, 2022 | 25 | 2022 |
| Domain control of nonlinear networked systems and applications to complex disease networks S Jin, FX Wu, X Zou Discrete & Continuous Dynamical Systems-B 22 (6), 2169-2206, 2017 | 21 | 2017 |
| Signalling by senescent melanocytes hyperactivates hair growth X Wang, R Ramos, AQ Phan, K Yamaga, JL Flesher, S Jiang, JW Oh, ... Nature 618 (7966), 808-817, 2023 | 18 | 2023 |
| Single-cell transcriptomic analysis reveals diversity within mammalian spinal motor neurons ES Liau, S Jin, YC Chen, WS Liu, M Calon, S Nedelec, Q Nie, JA Chen Nature Communications 14, 46, 2023 | 17 | 2023 |
| Trajectory control in nonlinear networked systems and its applications to complex biological systems S Jin, D Wang, X Zou SIAM Journal on Applied Mathematics 78 (1), 629-649, 2018 | 17 | 2018 |
| Computational exploration of cellular communication in skin from emerging single-cell and spatial transcriptomic data S Jin, R Ramos Biochemical Society Transactions 50 (1), 297-308, 2022 | 15 | 2022 |
| scRCMF: Identification of cell subpopulations and transition states from single cell transcriptomes X Zheng, S Jin, Q Nie, X Zou IEEE Transactions on Biomedical Engineering, 2019 | 15 | 2019 |
