Spatial reconstruction of single-cell gene expression data R Satija, JA Farrell, D Gennert, AF Schier, A Regev Nature biotechnology 33 (5), 495-502, 2015 | 4804 | 2015 |
Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis JA Farrell, Y Wang, SJ Riesenfeld, K Shekhar, A Regev, AF Schier Science 360 (6392), eaar3131, 2018 | 712 | 2018 |
Stem cell differentiation trajectories in Hydra resolved at single-cell resolution S Siebert, JA Farrell, JF Cazet, Y Abeykoon, AS Primack, CE Schnitzler, ... Science 365 (6451), eaav9314, 2019 | 303 | 2019 |
From Egg to Gastrula: How the Cell Cycle Is Remodeled During the Drosophila Mid-Blastula Transition JA Farrell, PH O'Farrell Annual review of genetics 48, 269-294, 2014 | 210 | 2014 |
Response to Nodal morphogen gradient is determined by the kinetics of target gene induction J Dubrulle, BM Jordan, L Akhmetova, JA Farrell, SH Kim, L Solnica-Krezel, ... Elife 4, e05042, 2015 | 95 | 2015 |
Mechanism and regulation of Cdc25/Twine protein destruction in embryonic cell-cycle remodeling JA Farrell, PH O’Farrell Current Biology 23 (2), 118-126, 2013 | 82 | 2013 |
Embryonic onset of late replication requires Cdc25 down-regulation JA Farrell, AW Shermoen, K Yuan, PH O'Farrell Genes & development 26 (7), 714-725, 2012 | 76 | 2012 |
Emergence of neuronal diversity during vertebrate brain development B Raj, JA Farrell, J Liu, J El Kholtei, AN Carte, JN Acedo, LY Du, ... Neuron 108 (6), 1058-1074. e6, 2020 | 66 | 2020 |
Influence of cyclin type and dose on mitotic entry and progression in the early Drosophila embryo ML McCleland, JA Farrell, PH O'Farrell Journal of Cell Biology 184 (5), 639-646, 2009 | 44 | 2009 |
Single-cell analysis of shared signatures and transcriptional diversity during zebrafish development A Sur, Y Wang, P Capar, G Margolin, MK Prochaska, JA Farrell Developmental Cell 58 (24), 3028-3047. e12, 2023 | 26 | 2023 |
Different cyclin types collaborate to reverse the S-phase checkpoint and permit prompt mitosis K Yuan, JA Farrell, PH O’Farrell Journal of Cell Biology 198 (6), 973-980, 2012 | 17 | 2012 |
Cell-type-specific mRNA transcription and degradation kinetics in zebrafish embryogenesis from metabolically labeled single-cell RNA-seq L Fishman, A Modak, G Nechooshtan, T Razin, F Erhard, A Regev, ... Nature Communications 15 (1), 3104, 2024 | 7* | 2024 |
Differentiation trajectories of the Hydra nervous system reveal transcriptional regulators of neuronal fate AS Primack, JF Cazet, HM Little, S Mühlbauer, BD Cox, CN David, ... bioRxiv, 2023 | 7 | 2023 |
Gene module reconstruction elucidates cellular differentiation processes and the regulatory logic of specialized secretion Y Wang, J Liu, LY Du, JL Wyss, JA Farrell, AF Schier bioRxiv, 10.1101/2023.12.29.573643, 2023 | 1 | 2023 |
Germ cells do not progress through spermatogenesis in the infertile zebrafish testis AL Sposato, DR Llewellyn, JM Weber, HL Hollins, MN Schrock, JA Farrell, ... bioRxiv, 2023 | | 2023 |
An oracle predicts regulators of cell identity JA Farrell Nature 614 (7949), 630-632, 2023 | | 2023 |
Towards a single cell molecular map for Hydra S Siebert, JA Farrell, J Cazet, Y Abeykoon, R Monroy, CE Juliano INTEGRATIVE AND COMPARATIVE BIOLOGY 58, E212-E212, 2018 | | 2018 |