| Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale CD Herring, A Raghunathan, C Honisch, T Patel, MK Applebee, AR Joyce, ... Nature genetics 38 (12), 1406-1412, 2006 | 465 | 2006 |
| Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction A Raghunathan, J Reed, S Shin, B Palsson, S Daefler BMC systems biology 3, 1-16, 2009 | 206 | 2009 |
| Simultaneous saccharification and fermentation of starch to lactic acid R Anuradha, AK Suresh, KV Venkatesh Process Biochemistry 35 (3-4), 367-375, 1999 | 187 | 1999 |
| A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2 I Thiele, DR Hyduke, B Steeb, G Fankam, DK Allen, S Bazzani, ... BMC systems biology 5, 1-9, 2011 | 169 | 2011 |
| Systems approach to investigating host-pathogen interactions in infections with the biothreat agent Francisella. Constraints-based model of Francisella tularensis A Raghunathan, S Shin, S Daefler BMC systems biology 4, 1-19, 2010 | 58 | 2010 |
| High-throughput mutation detection underlying adaptive evolution of Escherichia coli-K12 C Honisch, A Raghunathan, CR Cantor, BØ Palsson, D van den Boom Genome research 14 (12), 2495-2502, 2004 | 56 | 2004 |
| In Silico Metabolic Model and Protein Expression of Haemophilus influenzae Strain Rd KW20 in Rich Medium A Raghunathan, ND Price, MY Galperin, KS Makarova, S Purvine, ... OMICS: A Journal of Integrative Biology 8 (1), 25-41, 2004 | 56 | 2004 |
| Identification of potential drug targets in Salmonella enterica sv. Typhimurium using metabolic modelling and experimental validation HB Hartman, DA Fell, S Rossell, PR Jensen, MJ Woodward, L Thorndahl, ... Microbiology 160 (6), 1252-1266, 2014 | 54 | 2014 |
| Crystal Structure of a Hyperactive Escherichia coli Glycerol Kinase Mutant Gly230 → Asp Obtained Using Microfluidic Crystallization Devices, MJ Anderson, B DeLaBarre, A Raghunathan, BO Palsson, AT Brunger, ... Biochemistry 46 (19), 5722-5731, 2007 | 36 | 2007 |
| Microbial strategies for the depolymerization of glucuronoxylan: leads to biotechnological applications of endoxylanases JF Preston, JC Hurlbert, JD Rice, A Ragunathan, FJ St. John | 36 | 2003 |
| A scalable metabolite supplementation strategy against antibiotic resistant pathogen Chromobacterium violaceum induced by NAD+/NADH+ imbalance D Banerjee, D Parmar, N Bhattacharya, AD Ghanate, V Panchagnula, ... BMC systems biology 11, 1-20, 2017 | 22 | 2017 |
| Constraints-based analysis identifies NAD+ recycling through metabolic reprogramming in antibiotic resistant Chromobacterium violaceum D Banerjee, A Raghunathan PLoS One 14 (1), e0210008, 2019 | 18 | 2019 |
| Integrated constraints based analysis of an engineered violacein pathway in Escherichia coli SRC Immanuel, D Banerjee, MP Rajankar, A Raghunathan Biosystems 171, 10-19, 2018 | 15 | 2018 |
| Knowledge, attitude and practice of antibiotic use and antimicrobial resistance: a study post the'Red Line'initiative D Banerjee, A Raghunathan Current science, 1866-1877, 2018 | 15 | 2018 |
| Cell scale host-pathogen modeling: another branch in the evolution of constraint-based methods N Jamshidi, A Raghunathan Frontiers in Microbiology 6, 1032, 2015 | 15 | 2015 |
| Investigating host–pathogen behavior and their interaction using genome-scale metabolic network models PP Sadhukhan, A Raghunathan Immunoinformatics, 523-562, 2014 | 14 | 2014 |
| Integrative analysis of rewired central metabolism in temozolomide resistant cells SRC Immanuel, AD Ghanate, DS Parmar, F Marriage, V Panchagnula, ... Biochemical and Biophysical Research Communications 495 (2), 2010-2016, 2018 | 13 | 2018 |
| Modeling and experimental studies on intermittent starch feeding and citrate addition in simultaneous saccharification and fermentation of starch to flavor compounds AR Chavan, A Raghunathan, KV Venkatesh Journal of Industrial Microbiology and Biotechnology 36 (4), 509-519, 2009 | 12 | 2009 |
| Scalable method to determine mutations that occur during adaptive evolution of Escherichia coli A Raghunathan, BØ Palsson Biotechnology letters 25, 435-441, 2003 | 10 | 2003 |
| Absolute quantitation of poly(R)-3-hydroxybutyric acid using spectrofluorometry in recombinant Escherichia coli MP Rajankar, S Ravindranathan, PR Rajamohanan, A Raghunathan Biology Methods and Protocols 3 (1), bpy007, 2018 | 7 | 2018 |
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