| Development of isothermal-isobaric replica-permutation method for molecular dynamics and Monte Carlo simulations and its application to reveal temperature and pressure … M Yamauchi, H Okumura The Journal of Chemical Physics 147 (18), 2017 | 33 | 2017 |
| Molecular simulations by generalized-ensemble algorithms in isothermal–isobaric ensemble M Yamauchi, Y Mori, H Okumura Biophysical reviews 11, 457-469, 2019 | 22 | 2019 |
| Dimerization of α-Synuclein fragments studied by isothermal–isobaric replica-permutation molecular dynamics simulation M Yamauchi, H Okumura Journal of Chemical Information and Modeling 61 (3), 1307-1321, 2021 | 18 | 2021 |
| Replica sub‐permutation method for molecular dynamics and monte carlo simulations M Yamauchi, H Okumura Journal of Computational Chemistry 40 (31), 2694-2711, 2019 | 17 | 2019 |
| Ingenuity in performing replica permutation: How to order the state labels for improving sampling efficiency D Fukuhara, M Yamauchi, SG Itoh, H Okumura Journal of Computational Chemistry 44 (4), 534-545, 2023 | 7 | 2023 |
| Molecular dynamics simulations for the study of chromatin biology GB Brandani, S Gopi, M Yamauchi, S Takada Current Opinion in Structural Biology 77, 102485, 2022 | 6 | 2022 |
| Implementations of replica-permutation and replica sub-permutation methods into LAMMPS M Yamauchi, G La Penna, SG Itoh, H Okumura Computer Physics Communications 276, 108362, 2022 | 4 | 2022 |
| Chromosomal domain formation by archaeal SMC, a roadblock protein, and DNA structure K Yamaura, N Takemata, M Kariya, S Ishino, M Yamauchi, S Takada, ... bioRxiv, 2024.05. 14.594075, 2024 | 1 | 2024 |
| 若手の会だより 第 58 回生物物理若手の会夏の学校 開催報告 山内仁喬 生物物理 59 (1), 045-046, 2019 | 1 | 2019 |
| SMC complex unidirectionally translocates DNA by coupling segment capture with an asymmetric kleisin path M Yamauchi, GB Brandani, T Terakawa, S Takada bioRxiv, 2024.04. 29.591782, 2024 | | 2024 |
| Development and Application Studies on the Generalized-Ensemble Algorithms: Stability and Aggregation of Proteins 山内仁喬， ヤマウチ,マサタカ 総合研究大学院大学, 2021 | | 2021 |
| Replica-permutation Methods in Isothermal-Isobaric Ensemble and Their Applications to Investigate Protein Stability under High-pressure Conditions M Yamauchi, H Okumura Biophysical Journal 118 (3), 304a, 2020 | | 2020 |
| Replica sub-permutation molecular dynamics method for protein folding M Yamauchi, H Okumura EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 48, S140-S140, 2019 | | 2019 |
| 定温定圧レプリカ置換法の開発と高圧下でのシニョリンの特異な振る舞い 山内仁喬 アンサンブル 21 (2), 144-150, 2019 | | 2019 |
| Extension of replica-permutation molecular dynamics method to NPT ensemble and its application M Yamauchi, H Okumura EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 46, S234-S234, 2017 | | 2017 |
Hisashi OkumuraInstitute for Molecular Science在 ims.ac.jp 的电子邮件经过验证
