Joint analysis of heterogeneous single-cell RNA-seq dataset collections N Barkas, V Petukhov, D Nikolaeva, Y Lozinsky, S Demharter, ... Nature methods 16 (8), 695-698, 2019 | 247 | 2019 |
Tuning cytokine receptor signaling by re-orienting dimer geometry with surrogate ligands I Moraga, G Wernig, S Wilmes, V Gryshkova, CP Richter, WJ Hong, ... Cell 160 (6), 1196-1208, 2015 | 163 | 2015 |
Tracing the origin of adult intestinal stem cells J Guiu, E Hannezo, S Yui, S Demharter, S Ulyanchenko, M Maimets, ... Nature 570 (7759), 107-111, 2019 | 131 | 2019 |
Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis U Pfisterer, V Petukhov, S Demharter, J Meichsner, JJ Thompson, ... Nature communications 11 (1), 5038, 2020 | 123 | 2020 |
Core mitochondrial genes are down-regulated during SARS-CoV-2 infection of rodent and human hosts JW Guarnieri, JM Dybas, H Fazelinia, MS Kim, J Frere, Y Zhang, ... Science translational medicine 15 (708), eabq1533, 2023 | 56 | 2023 |
Current status and future challenges in T-cell receptor/peptide/MHC molecular dynamics simulations B Knapp, S Demharter, R Esmaielbeiki, CM Deane Briefings in bioinformatics 16 (6), 1035-1044, 2015 | 52 | 2015 |
Identifying interactions in omics data for clinical biomarker discovery using symbolic regression NJ Christensen, S Demharter, M Machado, L Pedersen, M Salvatore, ... Bioinformatics 38 (15), 3749-3758, 2022 | 28 | 2022 |
Exploring peptide/MHC detachment processes using hierarchical natural move Monte Carlo B Knapp, S Demharter, CM Deane, P Minary Bioinformatics 32 (2), 181-186, 2016 | 24 | 2016 |
Neuroserpin expression during human brain development and in adult brain revealed by immunohistochemistry and single cell RNA sequencing I Adorjan, T Tyler, A Bhaduri, S Demharter, CK Finszter, M Bako, ... Journal of Anatomy 235 (3), 543-554, 2019 | 23 | 2019 |
Complex IV subunit isoform COX 6A2 protects fast‐spiking interneurons from oxidative stress and supports their function B Sanz‐Morello, U Pfisterer, N Winther Hansen, S Demharter, A Thakur, ... The EMBO Journal 39 (18), e105759, 2020 | 17 | 2020 |
A large-scale genome-wide gene expression analysis in peripheral blood identifies very few differentially expressed genes related to antidepressant treatment and response in … AK Nøhr, M Lindow, A Forsingdal, S Demharter, T Nielsen, R Buller, ... Neuropsychopharmacology 46 (7), 1324-1332, 2021 | 11 | 2021 |
Ten simple rules for surviving an interdisciplinary PhD S Demharter, N Pearce, K Beattie, I Frost, J Leem, A Martin, ... PLoS Computational Biology 13 (5), e1005512, 2017 | 11 | 2017 |
Ductal keratin 15+ luminal progenitors in normal breast exhibit a basal-like breast cancer transcriptomic signature KT Kohler, N Goldhammer, S Demharter, U Pfisterer, K Khodosevich, ... NPJ Breast Cancer 8 (1), 81, 2022 | 9 | 2022 |
Modeling functional motions of biological systems by customized natural moves S Demharter, B Knapp, CM Deane, P Minary Biophysical Journal 111 (4), 710-721, 2016 | 9 | 2016 |
In silico structural modeling of multiple epigenetic marks on DNA K Krawczyk, S Demharter, B Knapp, CM Deane, P Minary Bioinformatics 34 (1), 41-48, 2018 | 8 | 2018 |
Dissection of gastric homeostasis in vivo facilitates permanent capture of isthmus-like stem cells in vitro AJ Huebner, RA Gorelov, R Deviatiiarov, S Demharter, T Kull, RM Walsh, ... Nature Cell Biology 25 (3), 390-403, 2023 | 7 | 2023 |
Coordinated maintenance of H3K36/K27 methylation by histone demethylases preserves germ cell identity and immortality N Zaghet, K Madsen, F Rossi, DF Perez, PG Amendola, S Demharter, ... Cell reports 37 (8), 2021 | 5 | 2021 |
HLA-DM Stabilizes the Empty MHCII Binding Groove: A Model Using Customized Natural Move Monte Carlo S Demharter, B Knapp, C Deane, P Minary Journal of Chemical Information and Modeling 59 (6), 2894-2899, 2019 | 3 | 2019 |
Explainable machine learning identifies multi-omics signatures of muscle response to spaceflight in mice K Li, R Desai, RT Scott, JR Steele, M Machado, S Demharter, A Hoarfrost, ... npj Microgravity 9 (1), 90, 2023 | 2 | 2023 |
Transcriptomics analysis reveals molecular alterations underpinning spaceflight dermatology H Cope, J Elsborg, S Demharter, JT McDonald, C Wernecke, ... Communications Medicine 4 (1), 106, 2024 | 1 | 2024 |