A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic MTG Holden, LY Hsu, K Kurt, LA Weinert, AE Mather, SR Harris, ... Genome research 23 (4), 653-664, 2013 | 515 | 2013 |
Livestock Origin for a Human Pandemic Clone of Community-Associated Methicillin-Resistant Staphylococcus aureus LE Spoor, PR McAdam, LA Weinert, A Rambaut, H Hasman, ... mBio 4 (4), e00356-13, 2013 | 249 | 2013 |
Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus PR McAdam, KE Templeton, GF Edwards, MTG Holden, EJ Feil, ... Proceedings of the National Academy of Sciences 109 (23), 9107-9112, 2012 | 209 | 2012 |
Frequent transmission of the Mycobacterium tuberculosis Beijing lineage and positive selection for the EsxW Beijing variant in Vietnam KE Holt, P McAdam, PVK Thai, NTT Thuong, DTM Ha, NN Lan, NH Lan, ... Nature genetics 50 (6), 849-856, 2018 | 190 | 2018 |
A single natural nucleotide mutation alters bacterial pathogen host tropism D Viana, M Comos, PR McAdam, MJ Ward, L Selva, CM Guinane, ... Nature genetics 47 (4), 361-366, 2015 | 159 | 2015 |
Adaptive Evolution of Staphylococcus aureus during Chronic Endobronchial Infection of a Cystic Fibrosis Patient PR McAdam, A Holmes, KE Templeton, JR Fitzgerald PloS one 6 (9), e24301, 2011 | 118 | 2011 |
Time-scaled evolutionary analysis of the transmission and antibiotic resistance dynamics of Staphylococcus aureus clonal complex 398 MJ Ward, CL Gibbons, PR McAdam, BAD Van Bunnik, EK Girvan, ... Applied and environmental microbiology 80 (23), 7275-7282, 2014 | 105 | 2014 |
Comprehensive profiling of poor-risk paired primary and recurrent triple-negative breast cancers reveals immune phenotype shifts KE Hutchinson, SE Yost, CW Chang, RM Johnson, AR Carr, PR McAdam, ... Clinical Cancer Research 26 (3), 657-668, 2020 | 88 | 2020 |
Gene flow in environmental Legionella pneumophila leads to genetic and pathogenic heterogeneity within a Legionnaires’ disease outbreak PR McAdam, CW Vander Broek, DSJ Lindsay, MJ Ward, MF Hanson, ... Genome biology 15, 1-10, 2014 | 61 | 2014 |
Improving reverse vaccinology with a machine learning approach BN Bowman, PR McAdam, S Vivona, JX Zhang, T Luong, RK Belew, ... Vaccine 29 (45), 8156-8164, 2011 | 61 | 2011 |
Evolutionary Dynamics of Pandemic Methicillin-Sensitive Staphylococcus aureus ST398 and Its International Spread via Routes of Human Migration AC Uhlemann, PR McAdam, SB Sullivan, JR Knox, H Khiabanian, ... MBio 8 (1), 10.1128/mbio. 01375-16, 2017 | 60 | 2017 |
High-throughput sequencing for the study of bacterial pathogen biology PR McAdam, EJ Richardson, JR Fitzgerald Current opinion in microbiology 19, 106-113, 2014 | 58 | 2014 |
Recombination-mediated remodelling of host–pathogen interactions during Staphylococcus aureus niche adaptation LE Spoor, E Richardson, AC Richards, GJ Wilson, C Mendonca, ... Microbial genomics 1 (4), e000036, 2015 | 55 | 2015 |
Molecular Longitudinal Tracking of Mycobacterium abscessus spp. during Chronic Infection of the Human Lung KM Kreutzfeldt, PR McAdam, P Claxton, A Holmes, AL Seagar, ... PloS one 8 (5), e63237, 2013 | 53 | 2013 |
Identification of source and sink populations for the emergence and global spread of the East-Asia clone of community-associated MRSA MJ Ward, M Goncheva, E Richardson, PR McAdam, E Raftis, A Kearns, ... Genome Biology 17, 1-13, 2016 | 42 | 2016 |
Genomic epidemiology of Mycobacterium bovis infection in sympatric badger and cattle populations in Northern Ireland A Akhmetova, J Guerrero, P McAdam, LCM Salvador, J Crispell, J Lavery, ... Microbial Genomics 9 (5), 001023, 2023 | 21 | 2023 |
Efficient national surveillance for health-care-associated infections BAD Van Bunnik, M Ciccolini, CL Gibbons, G Edwards, R Fitzgerald, ... BMC Public Health 15, 1-9, 2015 | 20 | 2015 |
Tumor fusion burden as a hallmark of immune infiltration in prostate cancer MC Wagle, J Castillo, S Srinivasan, T Holcomb, KC Yuen, EE Kadel, ... Cancer immunology research 8 (7), 844-850, 2020 | 13 | 2020 |
Genomic epizootiology of a Brucella abortus outbreak in Northern Ireland (1997–2012) AR Allen, G Milne, K Drees, E Presho, J Graham, P McAdam, K Jones, ... Infection, Genetics and Evolution 81, 104235, 2020 | 13 | 2020 |
Genome-wide single nucleotide polymorphism-based assay for high-resolution epidemiological analysis of the methicillin-resistant Staphylococcus aureus hospital clone EMRSA-15 A Holmes, G McAllister, PR McAdam, SH Choi, K Girvan, A Robb, ... Clinical Microbiology and Infection 20 (2), O124-O131, 2014 | 13 | 2014 |